| A0LXY7_GRAFK -force run |
| ID: | 1407783562 |
Query Sequence |
Download Alignment We filter this alignment to remove positions that have > 75% gaps before running GREMLIN. |
| Length: | 902 (857) | ||
| Sequences: | 358 (333.3) | ||
| Seq/Len: | 0.418 | ||
| Nf(neff/√len): | 11.4 |
Jackhmmer Results: (2014_04_16)
Sequences per length for each position, BEFORE the coverage/gap filter was applied
Legend: Dots above the red line, indicates positions where there is > 5 sequences per length (if visible, green bar = 20 seq/len). Point of this graphic is to give you an idea if resubmitting a sub-portion of your sequence might help increase the overall Seq/Len (which after applying the coverage filter is at: 0.418).
Sequences per length for each position, AFTER the coverage/gap filter was applied
Residue pairs sorted by coevolution strength:
Legend: The darker and larger the blue dots, the higher strength in covariance. Below we provide the list of the top [1.5 x length] covarying residues with sequence seperation > 3. The i and j are positions as given in the input sequence.
| i | j | Scaled score | Prob |
| 46_V | 71_I | 3.104 | 0.99 |
| 49_K | 68_D | 2.720 | 0.97 |
| 115_A | 160_S | 2.489 | 0.95 |
| 38_M | 46_V | 2.442 | 0.94 |
| 6_K | 10_F | 2.213 | 0.89 |
| 674_A | 715_L | 1.958 | 0.80 |
| 573_N | 593_N | 1.839 | 0.74 |
| 561_A | 564_V | 1.726 | 0.67 |
| 735_D | 800_N | 1.689 | 0.64 |
| 114_K | 159_N | 1.655 | 0.62 |
| 93_S | 96_E | 1.649 | 0.62 |
| 514_S | 518_F | 1.644 | 0.61 |
| 59_F | 62_A | 1.630 | 0.60 |
| 121_V | 127_A | 1.619 | 0.59 |
| 479_G | 510_S | 1.594 | 0.58 |
| 86_E | 114_K | 1.575 | 0.56 |
| 836_R | 839_K | 1.557 | 0.55 |
| 122_D | 126_N | 1.543 | 0.54 |
| 844_K | 849_A | 1.533 | 0.53 |
| 759_K | 762_G | 1.529 | 0.53 |
| 844_K | 847_S | 1.510 | 0.52 |
| 847_S | 852_S | 1.506 | 0.51 |
| 330_P | 605_V | 1.505 | 0.51 |
| 54_S | 59_F | 1.495 | 0.50 |
| 238_A | 553_L | 1.492 | 0.50 |
| 820_L | 823_K | 1.479 | 0.49 |
| 624_D | 655_L | 1.479 | 0.49 |
| 850_V | 854_K | 1.477 | 0.49 |
| 274_F | 738_V | 1.457 | 0.48 |
| 605_V | 657_G | 1.448 | 0.47 |
| 614_F | 657_G | 1.442 | 0.47 |
| 695_D | 699_N | 1.429 | 0.46 |
| 157_I | 160_S | 1.419 | 0.45 |
| 657_G | 713_T | 1.412 | 0.44 |
| 835_K | 840_K | 1.409 | 0.44 |
| 303_G | 437_G | 1.406 | 0.44 |
| 835_K | 838_P | 1.405 | 0.44 |
| 681_A | 688_A | 1.403 | 0.44 |
| 63_T | 121_V | 1.396 | 0.43 |
| 317_I | 340_M | 1.393 | 0.43 |
| 66_I | 771_K | 1.388 | 0.43 |
| 752_L | 799_L | 1.385 | 0.42 |
| 844_K | 848_T | 1.384 | 0.42 |
| 836_R | 849_A | 1.368 | 0.41 |
| 822_G | 830_D | 1.367 | 0.41 |
| 852_S | 855_T | 1.366 | 0.41 |
| 462_L | 724_I | 1.365 | 0.41 |
| 846_D | 850_V | 1.364 | 0.41 |
| 64_L | 385_L | 1.362 | 0.41 |
| 388_K | 415_D | 1.352 | 0.40 |
| 25_I | 34_V | 1.352 | 0.40 |
| 842_F | 848_T | 1.350 | 0.40 |
| 157_I | 162_V | 1.350 | 0.40 |
| 842_F | 847_S | 1.349 | 0.40 |
| 42_L | 119_I | 1.342 | 0.39 |
| 681_A | 800_N | 1.342 | 0.39 |
| 330_P | 657_G | 1.340 | 0.39 |
| 822_G | 832_L | 1.340 | 0.39 |
| 851_N | 858_T | 1.339 | 0.39 |
| 18_L | 157_I | 1.339 | 0.39 |
| 437_G | 464_F | 1.338 | 0.39 |
| 735_D | 752_L | 1.337 | 0.39 |
| 839_K | 854_K | 1.335 | 0.39 |
| 752_L | 788_I | 1.329 | 0.38 |
| 278_I | 752_L | 1.324 | 0.38 |
| 437_G | 487_G | 1.323 | 0.38 |
| 847_S | 855_T | 1.323 | 0.38 |
| 17_I | 26_F | 1.317 | 0.38 |
| 841_P | 846_D | 1.317 | 0.38 |
| 233_F | 466_Q | 1.315 | 0.38 |
| 34_V | 42_L | 1.310 | 0.37 |
| 843_N | 849_A | 1.307 | 0.37 |
| 837_D | 847_S | 1.302 | 0.37 |
| 696_D | 699_N | 1.302 | 0.37 |
| 596_N | 606_S | 1.294 | 0.36 |
| 752_L | 801_M | 1.291 | 0.36 |
| 39_N | 131_I | 1.291 | 0.36 |
| 848_T | 854_K | 1.286 | 0.36 |
| 839_K | 847_S | 1.284 | 0.35 |
| 317_I | 748_M | 1.281 | 0.35 |
| 227_E | 797_I | 1.281 | 0.35 |
| 409_N | 416_I | 1.280 | 0.35 |
| 827_A | 836_R | 1.276 | 0.35 |
| 836_R | 843_N | 1.274 | 0.35 |
| 853_Q | 857_S | 1.270 | 0.34 |
| 155_Y | 274_F | 1.266 | 0.34 |
| 278_I | 801_M | 1.266 | 0.34 |
| 843_N | 847_S | 1.264 | 0.34 |
| 848_T | 852_S | 1.261 | 0.34 |
| 28_S | 31_K | 1.261 | 0.34 |
| 845_N | 849_A | 1.259 | 0.34 |
| 748_M | 788_I | 1.257 | 0.34 |
| 839_K | 844_K | 1.257 | 0.34 |
| 854_K | 857_S | 1.257 | 0.34 |
| 278_I | 727_M | 1.256 | 0.34 |
| 849_A | 852_S | 1.254 | 0.33 |
| 847_S | 850_V | 1.254 | 0.33 |
| 11_V | 18_L | 1.251 | 0.33 |
| 735_D | 780_T | 1.243 | 0.33 |
| 69_L | 85_G | 1.242 | 0.33 |
| 731_I | 786_I | 1.241 | 0.33 |
| 844_K | 855_T | 1.239 | 0.32 |
| 479_G | 517_D | 1.235 | 0.32 |
| 460_A | 474_L | 1.234 | 0.32 |
| 828_I | 836_R | 1.232 | 0.32 |
| 833_Q | 836_R | 1.231 | 0.32 |
| 175_I | 178_L | 1.227 | 0.32 |
| 674_A | 678_L | 1.227 | 0.32 |
| 502_L | 510_S | 1.227 | 0.32 |
| 836_R | 846_D | 1.226 | 0.32 |
| 261_D | 502_L | 1.224 | 0.31 |
| 830_D | 833_Q | 1.224 | 0.31 |
| 278_I | 780_T | 1.221 | 0.31 |
| 674_A | 681_A | 1.220 | 0.31 |
| 818_K | 823_K | 1.219 | 0.31 |
| 481_T | 510_S | 1.219 | 0.31 |
| 344_N | 437_G | 1.219 | 0.31 |
| 752_L | 781_T | 1.217 | 0.31 |
| 50_D | 67_E | 1.217 | 0.31 |
| 809_T | 813_V | 1.214 | 0.31 |
| 844_K | 852_S | 1.214 | 0.31 |
| 35_K | 48_F | 1.213 | 0.31 |
| 837_D | 841_P | 1.211 | 0.31 |
| 322_A | 582_D | 1.209 | 0.31 |
| 695_D | 702_N | 1.209 | 0.31 |
| 706_I | 797_I | 1.208 | 0.30 |
| 278_I | 800_N | 1.208 | 0.30 |
| 434_K | 585_A | 1.206 | 0.30 |
| 640_P | 720_G | 1.205 | 0.30 |
| 640_P | 727_M | 1.204 | 0.30 |
| 83_A | 313_M | 1.203 | 0.30 |
| 113_N | 158_N | 1.201 | 0.30 |
| 86_E | 473_N | 1.201 | 0.30 |
| 618_L | 653_L | 1.199 | 0.30 |
| 847_S | 854_K | 1.199 | 0.30 |
| 338_L | 768_T | 1.196 | 0.30 |
| 834_G | 858_T | 1.195 | 0.30 |
| 17_I | 145_S | 1.194 | 0.30 |
| 733_G | 757_P | 1.194 | 0.30 |
| 258_T | 783_E | 1.190 | 0.29 |
| 262_V | 772_L | 1.190 | 0.29 |
| 802_Q | 806_N | 1.190 | 0.29 |
| 841_P | 848_T | 1.189 | 0.29 |
| 815_Q | 819_N | 1.189 | 0.29 |
| 728_N | 739_A | 1.188 | 0.29 |
| 835_K | 841_P | 1.188 | 0.29 |
| 125_G | 166_D | 1.187 | 0.29 |
| 838_P | 844_K | 1.186 | 0.29 |
| 833_Q | 838_P | 1.186 | 0.29 |
| 590_I | 720_G | 1.186 | 0.29 |
| 845_N | 848_T | 1.185 | 0.29 |
| 115_A | 326_Y | 1.184 | 0.29 |
| 425_I | 797_I | 1.184 | 0.29 |
| 90_L | 446_Y | 1.181 | 0.29 |
| 742_H | 750_Y | 1.180 | 0.29 |
| 313_M | 795_P | 1.179 | 0.29 |
| 655_L | 670_L | 1.176 | 0.29 |
| 677_E | 710_K | 1.176 | 0.29 |
| 815_Q | 834_G | 1.176 | 0.29 |
| 110_L | 754_L | 1.174 | 0.28 |
| 81_T | 430_Y | 1.173 | 0.28 |
| 849_A | 857_S | 1.171 | 0.28 |
| 845_N | 850_V | 1.168 | 0.28 |
| 840_K | 849_A | 1.167 | 0.28 |
| 819_N | 835_K | 1.166 | 0.28 |
| 811_K | 814_A | 1.166 | 0.28 |
| 31_K | 50_D | 1.166 | 0.28 |
| 850_V | 853_Q | 1.166 | 0.28 |
| 317_I | 324_F | 1.166 | 0.28 |
| 818_K | 822_G | 1.165 | 0.28 |
| 846_D | 854_K | 1.164 | 0.28 |
| 843_N | 854_K | 1.163 | 0.28 |
| 855_T | 859_G | 1.163 | 0.28 |
| 850_V | 857_S | 1.162 | 0.28 |
| 210_Y | 499_D | 1.162 | 0.28 |
| 843_N | 850_V | 1.161 | 0.28 |
| 846_D | 849_A | 1.161 | 0.28 |
| 625_I | 632_L | 1.159 | 0.28 |
| 845_N | 857_S | 1.158 | 0.27 |
| 831_I | 834_G | 1.158 | 0.27 |
| 853_Q | 858_T | 1.156 | 0.27 |
| 155_Y | 180_H | 1.156 | 0.27 |
| 843_N | 856_D | 1.154 | 0.27 |
| 124_L | 680_T | 1.153 | 0.27 |
| 166_D | 249_G | 1.153 | 0.27 |
| 844_K | 850_V | 1.153 | 0.27 |
| 441_L | 460_A | 1.153 | 0.27 |
| 837_D | 849_A | 1.152 | 0.27 |
| 717_F | 724_I | 1.152 | 0.27 |
| 162_V | 382_L | 1.151 | 0.27 |
| 250_Y | 683_I | 1.151 | 0.27 |
| 839_K | 842_F | 1.151 | 0.27 |
| 755_D | 758_A | 1.150 | 0.27 |
| 812_V | 821_E | 1.148 | 0.27 |
| 110_L | 433_V | 1.148 | 0.27 |
| 249_G | 284_K | 1.147 | 0.27 |
| 660_N | 664_T | 1.146 | 0.27 |
| 849_A | 854_K | 1.146 | 0.27 |
| 847_S | 858_T | 1.145 | 0.27 |
| 119_I | 462_L | 1.144 | 0.27 |
| 91_E | 148_F | 1.141 | 0.26 |
| 261_D | 326_Y | 1.141 | 0.26 |
| 97_L | 792_F | 1.140 | 0.26 |
| 781_T | 786_I | 1.138 | 0.26 |
| 377_I | 743_G | 1.138 | 0.26 |
| 833_Q | 842_F | 1.135 | 0.26 |
| 291_T | 504_G | 1.134 | 0.26 |
| 71_I | 246_T | 1.134 | 0.26 |
| 780_T | 801_M | 1.133 | 0.26 |
| 835_K | 848_T | 1.133 | 0.26 |
| 114_K | 170_K | 1.133 | 0.26 |
| 839_K | 850_V | 1.133 | 0.26 |
| 812_V | 819_N | 1.130 | 0.26 |
| 12_I | 571_L | 1.129 | 0.26 |
| 836_R | 851_N | 1.129 | 0.26 |
| 828_I | 834_G | 1.128 | 0.26 |
| 396_I | 489_L | 1.128 | 0.26 |
| 841_P | 851_N | 1.128 | 0.26 |
| 831_I | 846_D | 1.128 | 0.26 |
| 818_K | 833_Q | 1.128 | 0.26 |
| 657_G | 662_D | 1.128 | 0.26 |
| 849_A | 855_T | 1.127 | 0.26 |
| 834_G | 840_K | 1.125 | 0.26 |
| 6_K | 18_L | 1.124 | 0.26 |
| 756_V | 759_K | 1.123 | 0.25 |
| 831_I | 845_N | 1.123 | 0.25 |
| 838_P | 846_D | 1.123 | 0.25 |
| 829_N | 842_F | 1.122 | 0.25 |
| 834_G | 845_N | 1.121 | 0.25 |
| 826_D | 835_K | 1.121 | 0.25 |
| 839_K | 845_N | 1.121 | 0.25 |
| 840_K | 847_S | 1.121 | 0.25 |
| 769_L | 773_S | 1.118 | 0.25 |
| 844_K | 856_D | 1.118 | 0.25 |
| 313_M | 724_I | 1.118 | 0.25 |
| 831_I | 836_R | 1.118 | 0.25 |
| 752_L | 780_T | 1.115 | 0.25 |
| 851_N | 854_K | 1.114 | 0.25 |
| 838_P | 848_T | 1.113 | 0.25 |
| 460_A | 657_G | 1.113 | 0.25 |
| 851_N | 859_G | 1.112 | 0.25 |
| 836_R | 850_V | 1.108 | 0.25 |
| 815_Q | 826_D | 1.107 | 0.25 |
| 37_T | 40_D | 1.106 | 0.25 |
| 333_V | 678_L | 1.106 | 0.25 |
| 49_K | 69_L | 1.105 | 0.24 |
| 838_P | 850_V | 1.105 | 0.24 |
| 846_D | 852_S | 1.103 | 0.24 |
| 848_T | 857_S | 1.103 | 0.24 |
| 550_P | 628_S | 1.102 | 0.24 |
| 822_G | 829_N | 1.102 | 0.24 |
| 821_E | 829_N | 1.101 | 0.24 |
| 839_K | 857_S | 1.101 | 0.24 |
| 152_L | 674_A | 1.100 | 0.24 |
| 849_A | 853_Q | 1.099 | 0.24 |
| 278_I | 735_D | 1.099 | 0.24 |
| 839_K | 843_N | 1.099 | 0.24 |
| 825_V | 831_I | 1.099 | 0.24 |
| 709_S | 746_M | 1.097 | 0.24 |
| 98_F | 119_I | 1.096 | 0.24 |
| 855_T | 858_T | 1.095 | 0.24 |
| 721_M | 743_G | 1.094 | 0.24 |
| 854_K | 859_G | 1.094 | 0.24 |
| 815_Q | 822_G | 1.093 | 0.24 |
| 812_V | 824_A | 1.093 | 0.24 |
| 810_Q | 821_E | 1.093 | 0.24 |
| 850_V | 855_T | 1.093 | 0.24 |
| 572_K | 699_N | 1.091 | 0.24 |
| 828_I | 832_L | 1.090 | 0.24 |
| 834_G | 842_F | 1.089 | 0.24 |
| 828_I | 847_S | 1.089 | 0.24 |
| 4_A | 7_I | 1.088 | 0.24 |
| 849_A | 856_D | 1.086 | 0.23 |
| 846_D | 855_T | 1.086 | 0.23 |
| 847_S | 857_S | 1.086 | 0.23 |
| 834_G | 843_N | 1.086 | 0.23 |
| 809_T | 814_A | 1.086 | 0.23 |
| 822_G | 841_P | 1.085 | 0.23 |
| 161_R | 174_D | 1.085 | 0.23 |
| 11_V | 22_A | 1.084 | 0.23 |
| 164_Y | 275_L | 1.084 | 0.23 |
| 766_G | 769_L | 1.083 | 0.23 |
| 261_D | 302_F | 1.083 | 0.23 |
| 36_K | 135_D | 1.083 | 0.23 |
| 278_I | 781_T | 1.083 | 0.23 |
| 225_D | 232_T | 1.082 | 0.23 |
| 854_K | 858_T | 1.082 | 0.23 |
| 46_V | 160_S | 1.081 | 0.23 |
| 4_A | 9_G | 1.081 | 0.23 |
| 321_N | 603_G | 1.080 | 0.23 |
| 835_K | 859_G | 1.079 | 0.23 |
| 605_V | 614_F | 1.079 | 0.23 |
| 856_D | 859_G | 1.079 | 0.23 |
| 568_N | 691_L | 1.079 | 0.23 |
| 830_D | 837_D | 1.078 | 0.23 |
| 326_Y | 504_G | 1.078 | 0.23 |
| 848_T | 851_N | 1.078 | 0.23 |
| 829_N | 850_V | 1.076 | 0.23 |
| 66_I | 590_I | 1.076 | 0.23 |
| 605_V | 674_A | 1.076 | 0.23 |
| 841_P | 854_K | 1.076 | 0.23 |
| 843_N | 846_D | 1.076 | 0.23 |
| 837_D | 845_N | 1.076 | 0.23 |
| 519_M | 683_I | 1.075 | 0.23 |
| 813_V | 826_D | 1.075 | 0.23 |
| 287_E | 735_D | 1.074 | 0.23 |
| 207_G | 211_L | 1.074 | 0.23 |
| 823_K | 830_D | 1.073 | 0.23 |
| 275_L | 745_D | 1.072 | 0.23 |
| 824_A | 832_L | 1.072 | 0.23 |
| 107_I | 110_L | 1.071 | 0.23 |
| 15_I | 544_K | 1.070 | 0.23 |
| 835_K | 843_N | 1.069 | 0.23 |
| 148_F | 164_Y | 1.068 | 0.23 |
| 840_K | 843_N | 1.068 | 0.23 |
| 833_Q | 839_K | 1.068 | 0.23 |
| 601_L | 649_L | 1.068 | 0.23 |
| 803_Q | 807_N | 1.068 | 0.23 |
| 115_A | 157_I | 1.068 | 0.23 |
| 285_N | 289_V | 1.067 | 0.22 |
| 401_P | 750_Y | 1.067 | 0.22 |
| 842_F | 845_N | 1.067 | 0.22 |
| 842_F | 850_V | 1.066 | 0.22 |
| 439_A | 483_I | 1.066 | 0.22 |
| 387_L | 749_N | 1.065 | 0.22 |
| 655_L | 701_I | 1.064 | 0.22 |
| 162_V | 582_D | 1.063 | 0.22 |
| 734_I | 781_T | 1.063 | 0.22 |
| 839_K | 846_D | 1.063 | 0.22 |
| 7_I | 12_I | 1.063 | 0.22 |
| 415_D | 446_Y | 1.063 | 0.22 |
| 460_A | 473_N | 1.063 | 0.22 |
| 821_E | 824_A | 1.063 | 0.22 |
| 834_G | 841_P | 1.062 | 0.22 |
| 849_A | 858_T | 1.061 | 0.22 |
| 843_N | 855_T | 1.061 | 0.22 |
| 824_A | 834_G | 1.061 | 0.22 |
| 818_K | 832_L | 1.061 | 0.22 |
| 34_V | 37_T | 1.061 | 0.22 |
| 48_F | 494_G | 1.061 | 0.22 |
| 94_I | 683_I | 1.058 | 0.22 |
| 61_E | 511_N | 1.058 | 0.22 |
| 278_I | 681_A | 1.058 | 0.22 |
| 319_S | 756_V | 1.058 | 0.22 |
| 240_V | 247_F | 1.057 | 0.22 |
| 578_L | 741_S | 1.056 | 0.22 |
| 840_K | 856_D | 1.056 | 0.22 |
| 814_A | 822_G | 1.056 | 0.22 |
| 852_S | 858_T | 1.054 | 0.22 |
| 15_I | 575_K | 1.054 | 0.22 |
| 802_Q | 805_V | 1.053 | 0.22 |
| 18_L | 25_I | 1.052 | 0.22 |
| 755_D | 759_K | 1.051 | 0.22 |
| 841_P | 852_S | 1.050 | 0.22 |
| 635_M | 742_H | 1.049 | 0.22 |
| 313_M | 742_H | 1.048 | 0.22 |
| 459_N | 473_N | 1.048 | 0.22 |
| 44_A | 96_E | 1.047 | 0.21 |
| 487_G | 502_L | 1.047 | 0.21 |
| 831_I | 856_D | 1.047 | 0.21 |
| 814_A | 830_D | 1.046 | 0.21 |
| 439_A | 717_F | 1.046 | 0.21 |
| 835_K | 850_V | 1.046 | 0.21 |
| 767_N | 773_S | 1.046 | 0.21 |
| 836_R | 844_K | 1.046 | 0.21 |
| 842_F | 846_D | 1.045 | 0.21 |
| 835_K | 858_T | 1.044 | 0.21 |
| 841_P | 857_S | 1.043 | 0.21 |
| 331_K | 786_I | 1.043 | 0.21 |
| 812_V | 828_I | 1.043 | 0.21 |
| 510_S | 515_V | 1.043 | 0.21 |
| 164_Y | 728_N | 1.043 | 0.21 |
| 88_V | 341_E | 1.043 | 0.21 |
| 851_N | 856_D | 1.042 | 0.21 |
| 200_L | 205_Y | 1.041 | 0.21 |
| 731_I | 799_L | 1.040 | 0.21 |
| 843_N | 848_T | 1.040 | 0.21 |
| 823_K | 837_D | 1.040 | 0.21 |
| 832_L | 836_R | 1.039 | 0.21 |
| 837_D | 843_N | 1.039 | 0.21 |
| 832_L | 843_N | 1.038 | 0.21 |
| 6_K | 691_L | 1.038 | 0.21 |
| 392_N | 653_L | 1.038 | 0.21 |
| 491_N | 629_F | 1.037 | 0.21 |
| 837_D | 842_F | 1.036 | 0.21 |
| 743_G | 746_M | 1.036 | 0.21 |
| 829_N | 840_K | 1.034 | 0.21 |
| 46_V | 72_I | 1.033 | 0.21 |
| 827_A | 830_D | 1.033 | 0.21 |
| 844_K | 851_N | 1.033 | 0.21 |
| 818_K | 835_K | 1.033 | 0.21 |
| 845_N | 856_D | 1.033 | 0.21 |
| 839_K | 855_T | 1.033 | 0.21 |
| 167_K | 749_N | 1.033 | 0.21 |
| 37_T | 43_N | 1.032 | 0.21 |
| 781_T | 801_M | 1.032 | 0.21 |
| 477_T | 515_V | 1.030 | 0.21 |
| 605_V | 662_D | 1.030 | 0.21 |
| 841_P | 844_K | 1.029 | 0.21 |
| 835_K | 849_A | 1.029 | 0.21 |
| 832_L | 841_P | 1.029 | 0.21 |
| 841_P | 858_T | 1.028 | 0.21 |
| 50_D | 222_I | 1.027 | 0.20 |
| 814_A | 823_K | 1.026 | 0.20 |
| 354_I | 477_T | 1.026 | 0.20 |
| 842_F | 852_S | 1.025 | 0.20 |
| 823_K | 836_R | 1.025 | 0.20 |
| 261_D | 703_F | 1.025 | 0.20 |
| 31_K | 38_M | 1.024 | 0.20 |
| 807_N | 811_K | 1.024 | 0.20 |
| 848_T | 856_D | 1.024 | 0.20 |
| 512_T | 518_F | 1.023 | 0.20 |
| 852_S | 857_S | 1.023 | 0.20 |
| 815_Q | 838_P | 1.023 | 0.20 |
| 809_T | 817_K | 1.023 | 0.20 |
| 820_L | 830_D | 1.022 | 0.20 |
| 823_K | 838_P | 1.021 | 0.20 |
| 852_S | 859_G | 1.020 | 0.20 |
| 147_P | 591_S | 1.019 | 0.20 |
| 822_G | 833_Q | 1.018 | 0.20 |
| 806_N | 810_Q | 1.018 | 0.20 |
| 841_P | 855_T | 1.018 | 0.20 |
| 735_D | 801_M | 1.018 | 0.20 |
| 624_D | 648_K | 1.017 | 0.20 |
| 815_Q | 818_K | 1.017 | 0.20 |
| 104_P | 708_L | 1.016 | 0.20 |
| 5_L | 8_L | 1.016 | 0.20 |
| 786_I | 799_L | 1.015 | 0.20 |
| 66_I | 152_L | 1.015 | 0.20 |
| 163_K | 390_T | 1.015 | 0.20 |
| 485_A | 788_I | 1.015 | 0.20 |
| 838_P | 847_S | 1.013 | 0.20 |
| 843_N | 853_Q | 1.013 | 0.20 |
| 287_E | 801_M | 1.013 | 0.20 |
| 550_P | 607_T | 1.013 | 0.20 |
| 838_P | 856_D | 1.012 | 0.20 |
| 826_D | 829_N | 1.010 | 0.20 |
| 845_N | 853_Q | 1.010 | 0.20 |
| 289_V | 752_L | 1.009 | 0.20 |
| 496_L | 660_N | 1.008 | 0.20 |
| 361_F | 364_D | 1.008 | 0.20 |
| 657_G | 792_F | 1.008 | 0.20 |
| 233_F | 455_V | 1.008 | 0.20 |
| 841_P | 845_N | 1.008 | 0.20 |
| 829_N | 841_P | 1.008 | 0.20 |
| 840_K | 844_K | 1.007 | 0.20 |
| 440_S | 805_V | 1.007 | 0.20 |
| 841_P | 850_V | 1.007 | 0.20 |
| 752_L | 762_G | 1.007 | 0.20 |
| 167_K | 822_G | 1.007 | 0.20 |
| 9_G | 16_I | 1.007 | 0.20 |
| 107_I | 678_L | 1.006 | 0.19 |
| 83_A | 713_T | 1.005 | 0.19 |
| 851_N | 855_T | 1.005 | 0.19 |
| 818_K | 831_I | 1.005 | 0.19 |
| 74_N | 571_L | 1.005 | 0.19 |
| 837_D | 846_D | 1.005 | 0.19 |
| 833_Q | 843_N | 1.005 | 0.19 |
| 815_Q | 844_K | 1.005 | 0.19 |
| 832_L | 846_D | 1.005 | 0.19 |
| 5_L | 9_G | 1.004 | 0.19 |
| 643_S | 828_I | 1.004 | 0.19 |
| 829_N | 835_K | 1.003 | 0.19 |
| 838_P | 843_N | 1.003 | 0.19 |
| 835_K | 847_S | 1.003 | 0.19 |
| 51_I | 490_Q | 1.003 | 0.19 |
| 478_T | 520_V | 1.002 | 0.19 |
| 813_V | 823_K | 1.002 | 0.19 |
| 812_V | 823_K | 1.001 | 0.19 |
| 394_A | 438_T | 1.000 | 0.19 |
| 577_L | 596_N | 1.000 | 0.19 |
Prob = P(contact | scaled_score, seq/len).
Scaled Score = (raw_score/average(raw_scores)).
- Text file of contact predictions (all 3L/2 predictions)
- Generate restraints for ROSETTA Structure Modeling
- Import to GREMLIN BETA - features includes ability to upload PDB and latest P(contact) calculation based on eLife 2015 fitting to PDB data.
GREMLIN results overlayed on top 10 PDB hits:
Legend: Blue filled circles are GREMLIN results (Scaled Score > 1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on 10 HHsearch results which uses the overall probability and per-position alignment confidence. Inter oligomeric contacts in the pdb are in shades of red.
| PDB | M | Cov | P(%) | HHΔ | |
| 1s5lU | 2 | 0.102 | 56.1 | 0.978 | Contact Map |
| 2j5lA | 1 | 0 | 20.5 | 0.983 | Contact Map |
| 1spfA | 1 | 0.0288 | 17.6 | 0.983 | Contact Map |
| 1ej6B | 2 | 0.061 | 17.1 | 0.983 | Contact Map |
| 4efaE | 1 | 0.112 | 11.5 | 0.984 | Contact Map |
| 3v6iA | 2 | 0.1064 | 11.5 | 0.984 | Contact Map |
| 2lk9A | 1 | 0.0266 | 10.2 | 0.985 | Contact Map |
| 4jkvA | 2 | 0.112 | 8.1 | 0.986 | Contact Map |
| 1b6aA | 1 | 0 | 7.3 | 0.986 | Contact Map |
| 1m56D | 2 | 0.0266 | 7.3 | 0.986 | Contact Map |
Cov = coverage of hit
P(%) = probability
Sequence Conservation (Image Generated using WebLogo v3)