May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org
YKGF - Uncharacterized electron transport protein YkgF
UniProt: P77536 Sequence
 Download Alignment
We filter this alignment to remove sites that have > 75% gaps before running GREMLIN.
EcoGene: EG13583
Length: 475 (466)
Sequences: 590
Seq/Len: 1.27
YKGF
Paralog alert: 0.09 [within 20: 0.00] - ratio of genomes with paralogs
GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Scaled Score Prob
77_V 82_G 4.34 1.00
73_L 291_L 4.023 1.00
95_R 99_Q 3.696 1.00
458_E 466_K 3.437 1.00
60_D 311_R 3.359 1.00
77_V 291_L 3.308 1.00
101_A 201_I 3.058 1.00
201_I 236_I 2.978 1.00
77_V 289_F 2.977 1.00
82_G 289_F 2.956 1.00
98_L 129_A 2.9 1.00
76_K 79_Q 2.82 1.00
53_D 375_R 2.804 1.00
377_P 380_K 2.764 1.00
215_S 273_W 2.71 1.00
343_A 382_I 2.672 1.00
125_V 129_A 2.627 1.00
82_G 291_L 2.572 1.00
101_A 236_I 2.524 1.00
61_H 69_Y 2.491 1.00
106_A 201_I 2.468 1.00
74_S 78_T 2.462 1.00
55_A 257_M 2.456 1.00
98_L 125_V 2.415 0.99
72_Q 75_E 2.4 0.99
369_D 379_S 2.37 0.99
56_A 311_R 2.348 0.99
73_L 77_V 2.325 0.99
99_Q 103_R 2.293 0.99
104_K 234_T 2.279 0.99
167_R 171_E 2.273 0.99
65_N 68_A 2.266 0.99
210_V 245_A 2.264 0.99
110_V 199_A 2.209 0.99
85_Y 96_Y 2.178 0.99
91_E 95_R 2.168 0.99
71_Y 75_E 2.109 0.98
117_T 238_V 2.102 0.98
97_I 292_V 2.037 0.98
309_V 341_I 2.029 0.97
241_M 293_I 1.984 0.97
53_D 57_Q 1.972 0.97
104_K 288_E 1.968 0.97
362_C 382_I 1.962 0.97
132_Q 195_D 1.959 0.97
178_P 183_A 1.933 0.96
106_A 236_I 1.913 0.96
238_V 292_V 1.832 0.95
344_V 378_L 1.797 0.94
73_L 209_A 1.776 0.93
112_S 225_A 1.756 0.93
49_E 375_R 1.75 0.93
233_K 287_E 1.7 0.91
58_I 253_V 1.699 0.91
61_H 65_N 1.679 0.91
209_A 239_M 1.669 0.90
62_V 69_Y 1.666 0.90
89_T 92_D 1.665 0.90
421_M 462_S 1.663 0.90
63_L 311_R 1.647 0.89
344_V 381_L 1.644 0.89
200_E 233_K 1.643 0.89
95_R 103_R 1.629 0.89
85_Y 290_H 1.628 0.89
88_R 92_D 1.628 0.89
147_Q 172_R 1.626 0.89
103_R 288_E 1.613 0.88
120_I 238_V 1.61 0.88
146_D 160_K 1.607 0.88
343_A 362_C 1.603 0.88
169_L 188_I 1.581 0.87
20_D 164_Q 1.575 0.86
67_D 71_Y 1.553 0.85
362_C 378_L 1.543 0.85
206_C 239_M 1.541 0.85
101_A 106_A 1.539 0.85
74_S 86_F 1.537 0.85
56_A 60_D 1.532 0.84
262_A 316_G 1.524 0.84
17_Q 20_D 1.523 0.84
110_V 136_T 1.52 0.84
72_Q 76_K 1.512 0.83
34_I 155_V 1.507 0.83
188_I 192_I 1.501 0.83
148_D 160_K 1.498 0.83
301_V 348_L 1.491 0.82
65_N 69_Y 1.484 0.82
56_A 308_D 1.481 0.82
212_E 247_T 1.456 0.80
107_R 200_E 1.409 0.77
116_V 294_V 1.402 0.76
83_H 288_E 1.388 0.75
210_V 251_V 1.386 0.75
412_H 415_L 1.385 0.75
59_R 243_R 1.382 0.75
154_V 316_G 1.359 0.73
215_S 275_T 1.348 0.72
53_D 56_A 1.346 0.72
102_Q 129_A 1.34 0.72
96_Y 100_V 1.338 0.71
304_S 388_V 1.335 0.71
239_M 293_I 1.329 0.71
346_S 355_F 1.32 0.70
142_I 169_L 1.309 0.69
92_D 95_R 1.307 0.69
138_L 188_I 1.291 0.68
408_Y 412_H 1.289 0.67
96_Y 290_H 1.287 0.67
344_V 362_C 1.284 0.67
458_E 463_W 1.276 0.66
76_K 212_E 1.27 0.66
184_M 188_I 1.258 0.65
308_D 381_L 1.245 0.63
146_D 168_V 1.234 0.62
247_T 250_E 1.231 0.62
108_K 195_D 1.23 0.62
87_A 96_Y 1.225 0.62
194_E 198_S 1.219 0.61
208_F 251_V 1.213 0.60
38_R 261_S 1.21 0.60
39_Q 43_D 1.209 0.60
362_C 379_S 1.184 0.58
362_C 366_T 1.181 0.57
62_V 244_I 1.181 0.57
70_L 86_F 1.178 0.57
180_T 183_A 1.172 0.57
196_F 227_M 1.172 0.57
17_Q 23_M 1.17 0.56
204_T 229_T 1.157 0.55
127_Q 147_Q 1.151 0.54
80_N 275_T 1.15 0.54
135_E 337_Y 1.137 0.53
27_V 158_I 1.136 0.53
460_F 464_F 1.136 0.53
39_Q 371_V 1.128 0.52
364_L 382_I 1.12 0.51
22_I 161_D 1.103 0.50
221_N 316_G 1.102 0.50
265_A 269_G 1.102 0.50
206_C 243_R 1.093 0.49
70_L 446_W 1.088 0.48
111_K 365_C 1.088 0.48
209_A 293_I 1.085 0.48
340_P 446_W 1.08 0.47
101_A 203_I 1.079 0.47
220_T 226_R 1.074 0.47
125_V 128_D 1.068 0.46
45_L 58_I 1.066 0.46
139_G 221_N 1.062 0.46
308_D 311_R 1.059 0.45
306_F 381_L 1.052 0.45
382_I 385_H 1.051 0.45
206_C 209_A 1.05 0.45
82_G 206_C 1.049 0.44
141_Y 191_K 1.049 0.44
229_T 274_L 1.049 0.44
72_Q 79_Q 1.047 0.44
245_A 251_V 1.046 0.44
50_E 99_Q 1.044 0.44
70_L 74_S 1.041 0.44
241_M 371_V 1.04 0.44
97_I 275_T 1.036 0.43
333_Y 349_L 1.033 0.43
10_F 236_I 1.032 0.43
148_D 168_V 1.03 0.43
117_T 203_I 1.028 0.42
103_R 210_V 1.027 0.42
123_N 365_C 1.022 0.42
254_L 374_V 1.022 0.42
20_D 203_I 1.018 0.41
217_C 251_V 1.012 0.41
165_I 183_A 1.012 0.41
73_L 288_E 1.011 0.41
307_R 378_L 1.011 0.41
340_P 364_L 1.011 0.41
201_I 234_T 1.01 0.41
293_I 378_L 1.007 0.40
94_T 120_I 1.006 0.40
240_G 341_I 1.005 0.40
90_K 94_T 1 0.40
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Scaled Score = (raw_score/average(raw_scores)) > 1 are listed. For all 3L/2 predictions, click on one of the links below.
HHsearch Results: GREMLIN results overlayed on top 10 PDB hits:
Legend: Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on 10 HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov P(%) HHΔ   Acc
3cf4A10.83791000.748Contact Map0.16
2g40A10.41681000.799Contact Map0.63
2h88B20.477999.60.918Contact Map0.409
3vr8B20.528499.60.921Contact Map0.427
1kf6B20.471699.40.929Contact Map0.408
2wdqB30.437999.40.93Contact Map0.462
2bs2B20.444299.20.936Contact Map0.447
3c8yA10.5768980.957Contact Map0.063
1gteA40.766397.90.957Contact Map0.248
1hfeL20.349597.90.957Contact Map0.04
Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.
Page generated in 1.2261 seconds.