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OPENSEQ.org
RNFG - Electron transport complex protein RnfG
UniProt: P77285 Sequence
 Download Alignment
We filter this alignment to remove sites that have > 75% gaps before running GREMLIN.
EcoGene: EG13937
Length: 206 (202)
Sequences: 951
Seq/Len: 4.71
RNFG
Paralog alert: 0.35 [within 20: 0.01] - ratio of genomes with paralogs
GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Scaled Score Prob
99_G 126_E 2.189 1.00
111_D 117_L 2.106 1.00
102_G 125_H 2.015 1.00
36_E 39_S 1.981 1.00
58_A 61_Q 1.976 1.00
133_K 136_L 1.974 1.00
143_T 146_A 1.931 1.00
111_D 115_T 1.864 1.00
152_G 155_D 1.799 1.00
163_D 178_R 1.783 1.00
170_F 177_P 1.769 1.00
120_R 142_I 1.755 1.00
124_H 135_E 1.75 1.00
36_E 40_L 1.705 0.99
106_L 183_A 1.669 0.99
31_K 35_A 1.611 0.99
160_V 175_I 1.601 0.99
104_I 135_E 1.587 0.99
40_L 44_A 1.571 0.99
96_A 179_A 1.556 0.99
110_A 191_A 1.548 0.99
108_V 187_A 1.538 0.99
93_E 105_Q 1.533 0.99
94_A 187_A 1.489 0.98
106_L 121_V 1.483 0.98
39_S 43_K 1.464 0.98
29_M 33_T 1.448 0.98
56_N 83_Q 1.442 0.98
194_L 197_Q 1.433 0.98
124_H 128_P 1.43 0.97
121_V 183_A 1.402 0.97
104_I 134_I 1.395 0.97
133_K 170_F 1.371 0.97
104_I 121_V 1.365 0.96
181_V 185_K 1.354 0.96
182_N 186_R 1.325 0.96
32_T 36_E 1.325 0.96
135_E 142_I 1.318 0.95
99_G 104_I 1.31 0.95
191_A 195_P 1.307 0.95
62_S 82_K 1.306 0.95
161_K 164_G 1.293 0.95
56_N 84_D 1.29 0.95
197_Q 201_L 1.284 0.94
195_P 199_S 1.266 0.94
110_A 150_I 1.265 0.94
83_Q 88_V 1.259 0.94
37_Q 40_L 1.258 0.94
49_V 114_G 1.254 0.94
11_T 23_T 1.251 0.93
164_G 168_D 1.242 0.93
42_Q 77_R 1.238 0.93
27_N 31_K 1.222 0.92
45_L 109_G 1.217 0.92
148_K 166_D 1.212 0.92
162_K 175_I 1.207 0.92
141_W 170_F 1.198 0.91
12_L 30_T 1.195 0.91
110_A 187_A 1.194 0.91
175_I 178_R 1.183 0.91
197_Q 200_Q 1.175 0.90
194_L 199_S 1.17 0.90
91_V 109_G 1.166 0.90
169_Q 177_P 1.159 0.89
3_K 200_Q 1.159 0.89
32_T 35_A 1.156 0.89
46_F 79_Y 1.15 0.89
6_R 10_I 1.144 0.89
196_A 200_Q 1.138 0.88
89_A 117_L 1.117 0.87
150_I 158_W 1.115 0.87
136_L 143_T 1.113 0.87
82_K 87_P 1.111 0.87
41_Q 45_L 1.109 0.86
105_Q 123_E 1.105 0.86
49_V 119_T 1.097 0.86
23_T 27_N 1.095 0.85
121_V 184_V 1.092 0.85
136_L 141_W 1.086 0.85
163_D 171_T 1.086 0.85
1_M 202_P 1.086 0.85
196_A 201_L 1.08 0.84
97_P 103_A 1.079 0.84
2_L 6_R 1.074 0.84
28_Q 31_K 1.072 0.84
39_S 42_Q 1.066 0.83
46_F 91_V 1.057 0.83
19_S 31_K 1.057 0.83
196_A 199_S 1.054 0.82
40_L 109_G 1.053 0.82
106_L 109_G 1.051 0.82
102_G 124_H 1.05 0.82
141_W 145_F 1.038 0.81
188_G 191_A 1.034 0.81
40_L 43_K 1.033 0.81
35_A 38_A 1.032 0.81
119_T 145_F 1.03 0.80
114_G 147_G 1.029 0.80
193_T 197_Q 1.028 0.80
20_T 23_T 1.027 0.80
111_D 147_G 1.024 0.80
160_V 165_G 1.017 0.79
80_I 90_A 1.017 0.79
150_I 165_G 1.017 0.79
69_P 86_K 1.016 0.79
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Scaled Score = (raw_score/average(raw_scores)) > 1 are listed. For all 3L/2 predictions, click on one of the links below.
HHsearch Results: GREMLIN results overlayed on top 10 PDB hits:
Legend: Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on 10 HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov P(%) HHΔ   Acc
3lwxA10.81071000.417Contact Map0.536
3dczA10.83011000.431Contact Map0.573
3o6uA50.572899.70.67Contact Map0.451
2kzxA10.548599.40.735Contact Map0.294
2kv5A10.16028.80.955Contact Map0.106
2zjsE10.18455.90.958Contact Map0.223
2ls2A10.12145.60.959Contact Map0.445
4hyzA20.44663.30.963Contact Map0.624
2mc8A10.44663.30.963Contact Map0.582
2jx6A10.1652.90.964Contact Map0.378
Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.
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