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YBJJ - Inner membrane protein YbjJ
UniProt: P75810 Sequence
 Download Alignment
We filter this alignment to remove sites that have > 75% gaps before running GREMLIN.
EcoGene: EG13679
Length: 402 (375)
Sequences: 66749
Seq/Len: 178.00
YBJJ
Paralog alert: 0.90 [within 20: 0.68] - ratio of genomes with paralogs
Cluster includes: AMPG ARAE ARAJ BCR CYNX DGOT DTPA DTPB DTPD EMRB EMRD EMRY ENTS EXUT FSR FUCP GALP GARP GLPT GUDP HCAT HSRA KGTP LACY LPLT MDFA MDTD MDTG MDTH MDTL MDTM MELB MHPT NANT NARK NARU NEPI NUPG PROP RHMT SETA SETB SETC SHIA SOTB TSGA UHPC UHPT UIDB XAPB XYLE YAAU YAGG YAJR YBJJ YCAD YDEE YDFJ YDHC YDHP YDIM YDIN YDJE YDJK YEAN YEBQ YEGT YFCJ YGAY YGCS YHHS YHJE YHJX YICJ YIHN YIHO YIHP YJDL YJHB YJIJ YJJL YNFM YQCE
GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Scaled Score Prob
101_T 105_L 4.102 1.00
86_C 116_S 3.46 1.00
93_I 109_G 3.302 1.00
59_G 111_G 2.887 1.00
90_G 109_G 2.773 1.00
104_L 108_V 2.75 1.00
67_S 119_S 2.709 1.00
102_S 105_L 2.634 1.00
103_P 107_A 2.455 1.00
88_L 179_G 2.451 1.00
249_S 252_S 2.449 1.00
83_T 119_S 2.448 1.00
45_S 48_E 2.403 1.00
76_T 129_A 2.395 1.00
95_S 173_L 2.365 1.00
297_L 310_S 2.326 1.00
131_V 139_V 2.313 1.00
90_G 112_V 2.307 1.00
135_M 138_T 2.267 1.00
63_G 115_A 2.248 1.00
90_G 116_S 2.247 1.00
225_L 350_A 2.203 1.00
263_G 312_V 2.195 1.00
137_K 276_D 2.187 1.00
290_M 317_G 2.163 1.00
229_F 354_G 2.144 1.00
267_G 316_L 2.144 1.00
72_K 337_P 2.112 1.00
132_E 135_M 2.11 1.00
77_R 81_L 1.977 1.00
280_R 331_D 1.923 1.00
48_E 103_P 1.917 1.00
209_V 213_R 1.857 1.00
100_L 105_L 1.849 1.00
305_W 309_V 1.836 1.00
294_G 310_S 1.829 1.00
63_G 118_G 1.804 1.00
52_V 106_F 1.804 1.00
90_G 113_F 1.794 1.00
100_L 109_G 1.774 1.00
44_V 103_P 1.772 1.00
372_L 376_A 1.772 1.00
81_L 187_I 1.763 1.00
184_Y 188_Q 1.753 1.00
55_G 111_G 1.75 1.00
166_V 170_V 1.743 1.00
55_G 107_A 1.715 1.00
279_S 282_A 1.695 1.00
292_A 382_A 1.682 1.00
233_S 358_L 1.677 1.00
221_G 346_T 1.662 1.00
69_W 73_R 1.661 1.00
88_L 183_I 1.641 1.00
81_L 183_I 1.636 1.00
273_W 277_R 1.602 1.00
75_G 78_N 1.6 1.00
59_G 63_G 1.596 1.00
294_G 317_G 1.568 1.00
85_S 183_I 1.554 1.00
287_S 320_L 1.552 1.00
105_L 109_G 1.537 1.00
44_V 48_E 1.532 1.00
292_A 379_I 1.515 1.00
37_A 40_D 1.509 1.00
78_N 82_V 1.475 1.00
210_P 213_R 1.474 1.00
248_F 252_S 1.469 1.00
185_I 189_A 1.466 1.00
173_L 177_L 1.46 1.00
92_M 176_A 1.427 1.00
260_F 315_G 1.42 1.00
243_V 250_P 1.414 1.00
70_L 74_F 1.409 1.00
94_L 109_G 1.409 1.00
70_L 79_V 1.399 0.99
210_P 335_D 1.39 0.99
138_T 276_D 1.39 0.99
18_F 146_F 1.384 0.99
74_F 79_V 1.381 0.99
263_G 267_G 1.381 0.99
360_Y 364_H 1.376 0.99
88_L 180_I 1.374 0.99
104_L 107_A 1.371 0.99
274_F 278_Y 1.357 0.99
272_G 276_D 1.357 0.99
86_C 90_G 1.356 0.99
270_T 273_W 1.352 0.99
92_M 99_W 1.351 0.99
82_V 86_C 1.339 0.99
83_T 116_S 1.335 0.99
133_R 136_N 1.331 0.99
252_S 255_L 1.328 0.99
170_V 173_L 1.326 0.99
63_G 66_C 1.32 0.99
94_L 106_F 1.306 0.99
299_I 372_L 1.302 0.99
74_F 78_N 1.302 0.99
68_A 72_K 1.3 0.99
108_V 112_V 1.29 0.99
88_L 176_A 1.28 0.99
66_C 69_W 1.279 0.99
71_V 122_V 1.276 0.99
156_G 258_A 1.276 0.99
243_V 253_G 1.265 0.99
78_N 81_L 1.261 0.99
281_V 285_R 1.258 0.99
46_I 363_E 1.24 0.98
292_A 296_G 1.24 0.98
289_L 293_L 1.236 0.98
78_N 192_D 1.232 0.98
282_A 286_A 1.231 0.98
294_G 314_W 1.231 0.98
267_G 270_T 1.229 0.98
169_T 173_L 1.228 0.98
58_I 352_L 1.226 0.98
282_A 285_R 1.225 0.98
138_T 142_M 1.223 0.98
128_G 136_N 1.223 0.98
294_G 313_L 1.217 0.98
232_G 351_F 1.211 0.98
303_S 306_V 1.207 0.98
285_R 382_A 1.204 0.98
93_I 99_W 1.199 0.98
169_T 172_I 1.198 0.98
289_L 382_A 1.195 0.98
273_W 276_D 1.189 0.98
365_Y 369_S 1.181 0.98
72_K 338_T 1.181 0.98
329_A 343_V 1.18 0.98
39_R 49_M 1.175 0.98
305_W 308_G 1.173 0.98
56_L 60_S 1.172 0.98
287_S 317_G 1.166 0.97
376_A 380_L 1.162 0.97
75_G 79_V 1.159 0.97
218_L 222_V 1.152 0.97
37_A 41_I 1.151 0.97
242_M 248_F 1.147 0.97
25_G 147_Y 1.145 0.97
361_L 365_Y 1.143 0.97
177_L 181_A 1.137 0.97
292_A 375_L 1.134 0.97
296_G 300_F 1.133 0.97
241_L 246_H 1.13 0.97
79_V 82_V 1.127 0.97
156_G 160_A 1.119 0.96
54_F 352_L 1.119 0.96
95_S 99_W 1.115 0.96
350_A 354_G 1.109 0.96
34_R 162_T 1.104 0.96
59_G 114_G 1.104 0.96
61_M 345_T 1.102 0.96
71_V 76_T 1.101 0.96
47_A 363_E 1.098 0.96
51_G 356_P 1.095 0.96
127_E 143_M 1.094 0.96
271_G 320_L 1.091 0.96
105_L 108_V 1.09 0.96
230_A 378_V 1.083 0.96
369_S 372_L 1.082 0.96
299_I 375_L 1.08 0.95
212_Y 218_L 1.074 0.95
89_I 93_I 1.072 0.95
224_V 343_V 1.064 0.95
54_F 356_P 1.059 0.95
167_P 170_V 1.058 0.95
51_G 55_G 1.057 0.95
93_I 105_L 1.056 0.95
251_T 255_L 1.052 0.95
68_A 337_P 1.049 0.94
215_I 219_L 1.049 0.94
309_V 312_V 1.047 0.94
163_A 251_T 1.047 0.94
241_L 245_G 1.046 0.94
255_L 259_G 1.046 0.94
296_G 375_L 1.043 0.94
176_A 180_I 1.042 0.94
290_M 294_G 1.04 0.94
359_G 363_E 1.039 0.94
286_A 290_M 1.039 0.94
215_I 218_L 1.038 0.94
126_V 190_I 1.036 0.94
161_L 170_V 1.036 0.94
262_L 266_V 1.035 0.94
335_D 338_T 1.034 0.94
368_R 372_L 1.025 0.93
84_M 183_I 1.022 0.93
266_V 269_F 1.018 0.93
269_F 273_W 1.017 0.93
222_V 226_A 1.012 0.93
48_E 107_A 1.012 0.93
278_Y 283_V 1.012 0.93
217_L 221_G 1.011 0.93
22_F 150_G 1.01 0.93
61_M 352_L 1.009 0.93
39_R 46_I 1.006 0.93
56_L 117_F 1.005 0.93
121_E 125_N 1.002 0.92
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Scaled Score = (raw_score/average(raw_scores)) > 1 are listed. For all 3L/2 predictions, click on one of the links below.
HHsearch Results: GREMLIN results overlayed on top 10 PDB hits:
Legend: Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on 10 HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov P(%) HHΔ   Acc
1pw4A10.98761000.165Contact Map0.478
3wdoA10.97511000.168Contact Map0.628
3o7qA10.97511000.201Contact Map0.643
4j05A20.98761000.202Contact Map0.596
2gfpA20.92041000.206Contact Map0.196
2cfqA10.97761000.21Contact Map0.525
2xutA30.99251000.251Contact Map0.531
4gc0A10.9951000.26Contact Map0.712
4ldsA20.97261000.263Contact Map0.633
4lepA20.991000.264Contact Map0.637
Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.
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