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OPENSEQ.org

INSO1 - Putative transposase InsO for insertion sequence element IS911A
UniProt: P75680 Sequence
Download Alignment
We filter this alignment to remove sites that have > 75% gaps before running GREMLIN.
EcoGene:
Length: 141 (133)
Sequences: 3161
Seq/Len: 23.77

INSO1
Paralog alert: 0.67 [within 20: 0.16] - ratio of genomes with paralogs
Cluster includes: INSD1 INSD2 INSD3 INSD4 INSD5 INSD6 INSD8 INSF1 INSF2 INSF3 INSF4 INSF5 INSK INSO1 INSO2 YAGA
GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Scaled Score Prob
33_R 75_L 3.207 1.00
111_N 114_W 3.112 1.00
36_V 52_I 3.022 1.00
35_Q 59_R 2.877 1.00
109_E 112_Q 2.783 1.00
11_H 14_S 2.752 1.00
39_L 52_I 2.432 1.00
107_V 113_V 2.426 1.00
29_R 67_L 2.249 1.00
64_G 67_L 2.193 1.00
39_L 55_M 2.115 1.00
49_A 69_G 2.086 1.00
53_A 57_T 2.081 1.00
101_L 113_V 2.069 1.00
35_Q 38_E 2.044 1.00
63_M 68_A 1.953 1.00
33_R 74_E 1.947 1.00
40_H 77_L 1.914 1.00
120_Y 127_G 1.911 1.00
49_A 65_R 1.886 1.00
47_A 51_S 1.885 1.00
33_R 71_L 1.858 1.00
35_Q 61_Y 1.805 1.00
71_L 75_L 1.672 1.00
67_L 70_R 1.631 1.00
32_L 63_M 1.598 1.00
108_T 112_Q 1.565 1.00
55_M 58_Q 1.523 1.00
104_Q 113_V 1.509 1.00
87_Y 90_G 1.456 1.00
57_T 62_Q 1.414 1.00
123_P 126_Q 1.374 0.99
29_R 70_R 1.368 0.99
91_G 94_H 1.367 0.99
69_G 73_K 1.361 0.99
55_M 59_R 1.343 0.99
53_A 68_A 1.315 0.99
28_R 67_L 1.293 0.99
40_H 45_G 1.268 0.99
38_E 42_I 1.251 0.99
43_S 46_S 1.249 0.99
13_S 16_K 1.233 0.98
17_Y 21_R 1.205 0.98
53_A 65_R 1.193 0.98
28_R 31_V 1.179 0.98
86_R 89_R 1.135 0.97
10_V 14_S 1.127 0.97
116_G 131_C 1.103 0.96
52_I 72_M 1.082 0.96
56_A 68_A 1.068 0.95
37_L 75_L 1.066 0.95
51_S 55_M 1.063 0.95
92_H 95_V 1.06 0.95
66_W 69_G 1.051 0.94
50_R 69_G 1.027 0.94
89_R 92_H 1.025 0.93
29_R 32_L 1.01 0.93
65_R 69_G 1.007 0.93
121_S 130_G 1.001 0.92
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Scaled Score = (raw_score/average(raw_scores)) > 1 are listed. For all 3L/2 predictions, click on one of the links below.
HHsearch Results: GREMLIN results overlayed on top 10 PDB hits:
Legend: Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on 10 HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov P(%) HHΔ   Acc
3hotA20.957499.60.599Contact Map0.744
4fcyA20.971699.50.607Contact Map0.526
3oymA20.914998.40.758Contact Map0.516
1k78A30.574598.10.775Contact Map0.863
1pdnC10.531997.90.783Contact Map0.737
2k27A10.673897.60.797Contact Map0.61
2ahqA10.524897.30.811Contact Map0.666
3av9A20.390197.10.815Contact Map0.233
1u78A10.758996.10.835Contact Map0.697
4fw2A20.624195.60.842Contact Map0.712

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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