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OPENSEQ.org
NANC - Probable N-acetylneuraminic acid outer membrane channel protein NanC
UniProt: P69856 Sequence
 Download Alignment
We filter this alignment to remove sites that have > 75% gaps before running GREMLIN.
EcoGene: EG12389
Length: 238 (235)
Sequences: 124
Seq/Len: 0.53
NANC
Paralog alert: 0.76 [within 20: 0.01] - ratio of genomes with paralogs
Cluster includes: NANC OMPL
GREMLIN Results:
  • No predictions exist for P69856
  • Not enough sequences to perform GREMLIN analysis on (0.53 < 1)
HHsearch Results: GREMLIN results overlayed on top 10 PDB hits:
Legend: Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on 10 HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov P(%) HHΔ   Acc
Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.
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