May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org
YHGN - UPF0056 inner membrane protein YhgN
UniProt: P67143 Sequence
 Download Alignment
We filter this alignment to remove sites that have > 75% gaps before running GREMLIN.
EcoGene: EG12941
Length: 197 (195)
Sequences: 1249
Seq/Len: 6.41
YHGN
Paralog alert: 0.53 [within 20: 0.01] - ratio of genomes with paralogs
Cluster includes: MARC YCHE YHGN
GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Scaled Score Prob
71_T 185_Q 3.131 1.00
74_I 188_L 3.062 1.00
51_M 120_I 3.056 1.00
188_L 194_W 2.99 1.00
82_L 85_I 2.584 1.00
32_E 35_R 2.28 1.00
150_F 154_L 2.217 1.00
48_L 146_W 2.055 1.00
50_V 112_I 1.953 1.00
45_L 49_L 1.95 1.00
48_L 52_L 1.922 1.00
46_I 107_I 1.819 1.00
41_V 150_F 1.818 1.00
78_I 81_F 1.777 1.00
48_L 143_L 1.77 1.00
55_L 124_L 1.685 1.00
147_G 151_V 1.685 1.00
70_E 193_M 1.667 1.00
59_E 63_A 1.646 1.00
52_L 143_L 1.646 1.00
81_F 187_F 1.629 1.00
8_A 144_L 1.619 1.00
185_Q 189_D 1.603 1.00
74_I 194_W 1.593 1.00
24_F 28_L 1.563 0.99
164_G 167_G 1.555 0.99
87_M 175_M 1.546 0.99
44_L 146_W 1.539 0.99
15_M 145_A 1.539 0.99
50_V 116_A 1.521 0.99
51_M 124_L 1.504 0.99
81_F 183_A 1.472 0.99
47_A 146_W 1.458 0.99
4_I 140_I 1.441 0.99
87_M 176_G 1.429 0.99
13_L 16_D 1.417 0.99
124_L 142_L 1.403 0.98
8_A 148_G 1.376 0.98
16_D 19_G 1.373 0.98
24_F 40_M 1.372 0.98
70_E 73_S 1.366 0.98
143_L 147_G 1.355 0.98
7_A 127_L 1.355 0.98
74_I 184_T 1.345 0.98
84_A 183_A 1.29 0.97
71_T 188_L 1.272 0.97
87_M 172_E 1.27 0.97
50_V 111_A 1.268 0.97
7_A 141_A 1.263 0.97
79_I 83_I 1.263 0.97
42_R 104_E 1.245 0.96
37_R 154_L 1.242 0.96
19_G 22_P 1.228 0.96
62_L 68_R 1.223 0.96
192_R 195_M 1.21 0.95
51_M 116_A 1.189 0.95
128_S 138_L 1.182 0.94
15_M 120_I 1.178 0.94
13_L 65_L 1.174 0.94
46_I 111_A 1.168 0.94
44_L 149_T 1.166 0.94
44_L 150_F 1.159 0.94
106_F 111_A 1.147 0.93
28_L 32_E 1.139 0.93
24_F 156_S 1.134 0.93
11_L 124_L 1.127 0.92
20_N 153_L 1.124 0.92
38_A 42_R 1.089 0.91
56_F 139_V 1.078 0.90
24_F 110_L 1.078 0.90
84_A 180_V 1.076 0.90
43_E 47_A 1.076 0.90
68_R 185_Q 1.06 0.89
151_V 155_Q 1.059 0.89
34_K 133_N 1.059 0.89
62_L 181_M 1.057 0.89
22_P 25_M 1.055 0.89
16_D 22_P 1.055 0.89
90_P 173_R 1.053 0.89
158_L 161_R 1.05 0.88
144_L 148_G 1.049 0.88
188_L 191_I 1.045 0.88
16_D 175_M 1.039 0.88
20_N 114_L 1.037 0.88
11_L 15_M 1.031 0.87
23_I 157_S 1.029 0.87
20_N 79_I 1.025 0.87
51_M 142_L 1.011 0.86
24_F 36_R 1.009 0.86
72_V 177_L 1.007 0.85
79_I 114_L 1.004 0.85
32_E 38_A 1.003 0.85
98_G 196_K 1 0.85
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Scaled Score = (raw_score/average(raw_scores)) > 1 are listed. For all 3L/2 predictions, click on one of the links below.
HHsearch Results:
PDB Chains Cov P(%) HHΔ   Acc
2cfqA10.52799.40.953Contact Map0.371
2lx0A10.16242.30.965Contact Map0.755
1pw4A10.52792.30.965Contact Map0.146
3w4tA10.80711.80.967Contact Map0.194
4he8H20.32491.60.968Contact Map0.248
3arcX20.17261.50.968Contact Map0.486
4lz6A10.76651.50.969Contact Map0.18
2xutA30.5331.40.969Contact Map0.267
2j3tC10.24371.30.969Contact Map0.424
1hjiB10.1321.10.971Contact Map0.469
Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.
Page generated in 0.8044 seconds.