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OPENSEQ.org
YGDQ - UPF0053 inner membrane protein YgdQ
UniProt: P67127 Sequence
 Download Alignment
We filter this alignment to remove sites that have > 75% gaps before running GREMLIN.
EcoGene: EG13092
Length: 237 (233)
Sequences: 1170
Seq/Len: 5.02
YGDQ
Paralog alert: 0.53 [within 20: 0.03] - ratio of genomes with paralogs
GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Scaled Score Prob
42_T 45_R 4.137 1.00
61_L 158_M 3.541 1.00
15_L 163_I 2.859 1.00
19_T 163_I 2.322 1.00
55_G 133_M 2.259 1.00
15_L 159_A 2.217 1.00
46_A 173_R 2.05 1.00
40_L 48_A 1.958 1.00
76_P 84_E 1.938 1.00
47_H 125_F 1.915 1.00
9_P 12_W 1.886 1.00
77_L 87_A 1.882 1.00
78_F 85_I 1.877 1.00
3_F 6_I 1.832 1.00
214_I 218_M 1.804 1.00
64_L 161_V 1.773 1.00
155_F 159_A 1.737 1.00
41_P 44_Q 1.668 0.99
141_L 144_V 1.625 0.99
101_W 105_K 1.616 0.99
54_A 58_V 1.61 0.99
157_M 190_L 1.605 0.99
80_I 83_Q 1.599 0.99
44_Q 47_H 1.579 0.99
159_A 163_I 1.579 0.99
65_A 154_L 1.575 0.99
96_G 201_I 1.571 0.99
79_T 85_I 1.54 0.99
59_M 137_I 1.51 0.99
173_R 177_D 1.488 0.98
8_D 11_A 1.48 0.98
177_D 181_R 1.464 0.98
22_E 26_G 1.439 0.98
112_E 182_H 1.424 0.98
61_L 65_A 1.411 0.98
16_G 20_L 1.396 0.97
93_L 204_S 1.383 0.97
79_T 82_S 1.38 0.97
83_Q 206_D 1.367 0.97
230_I 233_K 1.358 0.97
30_I 175_I 1.358 0.97
45_R 180_E 1.353 0.97
104_S 221_S 1.334 0.96
10_N 13_L 1.331 0.96
107_I 187_M 1.326 0.96
62_A 66_S 1.318 0.96
86_S 89_D 1.275 0.95
63_L 140_S 1.272 0.95
79_T 84_E 1.266 0.95
187_M 227_L 1.255 0.94
11_A 156_I 1.247 0.94
75_N 82_S 1.245 0.94
108_H 184_S 1.224 0.93
47_H 51_L 1.221 0.93
48_A 125_F 1.213 0.93
43_A 47_H 1.207 0.93
53_L 193_L 1.205 0.92
226_S 230_I 1.198 0.92
64_L 196_V 1.19 0.92
82_S 234_K 1.168 0.91
79_T 83_Q 1.166 0.91
75_N 234_K 1.156 0.90
51_L 55_G 1.152 0.90
58_V 62_A 1.144 0.90
80_I 223_A 1.138 0.89
18_L 147_A 1.126 0.89
81_F 233_K 1.122 0.88
126_L 129_I 1.11 0.88
50_R 54_A 1.104 0.87
11_A 159_A 1.101 0.87
212_G 216_F 1.1 0.87
231_R 234_K 1.091 0.86
66_S 69_W 1.082 0.86
3_F 7_T 1.078 0.86
85_I 206_D 1.077 0.86
6_I 16_G 1.076 0.85
75_N 78_F 1.07 0.85
66_S 144_V 1.064 0.85
94_L 97_L 1.061 0.84
74_T 88_R 1.059 0.84
45_R 173_R 1.059 0.84
63_L 98_F 1.053 0.84
85_I 205_F 1.041 0.83
77_L 90_L 1.038 0.83
75_N 83_Q 1.035 0.82
75_N 79_T 1.034 0.82
81_F 84_E 1.034 0.82
80_I 85_I 1.029 0.82
67_I 137_I 1.028 0.82
192_F 196_V 1.026 0.82
19_T 30_I 1.021 0.81
65_A 158_M 1.019 0.81
195_L 216_F 1.017 0.81
31_I 192_F 1.01 0.80
57_M 169_M 1.005 0.80
225_E 228_N 1.003 0.79
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Scaled Score = (raw_score/average(raw_scores)) > 1 are listed. For all 3L/2 predictions, click on one of the links below.
HHsearch Results:
PDB Chains Cov P(%) HHΔ   Acc
2gfpA20.940919.10.96Contact Map0.134
2cfqA10.464113.90.962Contact Map0.694
1pw4A10.485213.30.962Contact Map0.442
4ainA30.675190.965Contact Map0.334
2xutA30.52328.20.966Contact Map0.343
4apsA20.46846.10.968Contact Map0.298
3o7qA10.42625.70.968Contact Map0.354
2ksdA10.29543.20.972Contact Map0.209
4ikvA10.4812.80.973Contact Map0.725
3wdoA10.62032.50.973Contact Map0.567
Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.
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