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OPENSEQ.org

YHAI - Inner membrane protein YhaI
UniProt: P64592 Sequence
Download Alignment
We filter this alignment to remove sites that have > 75% gaps before running GREMLIN.
EcoGene: EG12748
Length: 118 (116)
Sequences: 756
Seq/Len: 6.52

YHAI
Paralog alert: 0.51 [within 20: 0.13] - ratio of genomes with paralogs
Cluster includes: YHAH YHAI YIIR
GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Scaled Score Prob
10_N 13_G 3.278 1.00
19_R 114_K 2.996 1.00
12_V 61_L 2.574 1.00
93_V 97_F 2.438 1.00
92_L 96_V 2.41 1.00
21_K 25_M 2.391 1.00
102_G 112_D 2.343 1.00
75_D 108_R 2.264 1.00
75_D 103_T 2.261 1.00
79_A 82_L 2.214 1.00
68_I 81_A 2.147 1.00
101_E 114_K 2.144 1.00
14_F 65_A 2.041 1.00
4_Y 30_N 1.963 1.00
30_N 55_Y 1.879 1.00
78_G 81_A 1.841 1.00
19_R 101_E 1.809 1.00
75_D 109_Y 1.777 1.00
18_A 22_E 1.704 1.00
107_N 110_G 1.668 1.00
6_S 10_N 1.629 1.00
18_A 69_R 1.555 0.99
1_M 5_L 1.497 0.99
72_H 78_G 1.474 0.99
4_Y 8_L 1.452 0.99
7_V 26_F 1.434 0.99
55_Y 59_T 1.388 0.98
71_L 94_L 1.375 0.98
95_L 99_C 1.367 0.98
67_A 98_F 1.344 0.98
14_F 64_L 1.337 0.98
101_E 112_D 1.291 0.97
26_F 66_L 1.262 0.97
17_R 110_G 1.249 0.96
105_G 112_D 1.234 0.96
4_Y 55_Y 1.225 0.96
74_T 97_F 1.197 0.95
10_N 18_A 1.196 0.95
3_W 21_K 1.161 0.94
102_G 109_Y 1.141 0.93
91_W 95_L 1.139 0.93
23_Y 98_F 1.126 0.93
68_I 78_G 1.112 0.92
29_I 33_V 1.098 0.91
103_T 112_D 1.075 0.90
74_T 100_T 1.073 0.90
24_W 74_T 1.065 0.90
61_L 69_R 1.053 0.89
32_I 36_I 1.039 0.88
94_L 98_F 1.023 0.87
112_D 115_F 1.005 0.86
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Scaled Score = (raw_score/average(raw_scores)) > 1 are listed. For all 3L/2 predictions, click on one of the links below.
HHsearch Results:
PDB Chains Cov P(%) HHΔ   Acc
3hd7B20.37295.60.939Contact Map0.516
2m8rA10.37295.60.939Contact Map0.315
4hygA40.389840.943Contact Map0.044
2ww9B10.47462.90.947Contact Map0.108
2wwbB10.49152.60.948Contact Map0.454
3rf1A20.61022.10.95Contact Map0.062
3ayfA10.44921.80.952Contact Map0.52
1j5wA20.44921.60.953Contact Map0.065
2lcnA10.1781.60.953Contact Map0.745
3bo0B10.47461.60.953Contact Map0.355

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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