May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org
YPJD - Inner membrane protein YpjD
UniProt: P64432 Sequence
 Download Alignment
We filter this alignment to remove sites that have > 75% gaps before running GREMLIN.
EcoGene: EG14226
Length: 263 (256)
Sequences: 1451
Seq/Len: 5.67
YPJD
Paralog alert: 0.18 [within 20: 0.00] - ratio of genomes with paralogs
GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Scaled Score Prob
46_A 74_L 4.678 1.00
188_T 217_W 3.28 1.00
131_S 190_T 3.024 1.00
42_L 78_T 2.919 1.00
184_V 221_I 2.456 1.00
142_A 242_V 2.448 1.00
38_A 97_Y 2.428 1.00
141_A 180_T 2.372 1.00
139_I 245_A 2.133 1.00
138_L 183_G 2.093 1.00
232_W 236_R 1.951 1.00
184_V 217_W 1.85 1.00
42_L 77_C 1.768 1.00
216_A 248_L 1.725 1.00
49_L 74_L 1.653 1.00
223_L 244_G 1.6 0.99
41_A 77_C 1.513 0.99
198_M 202_F 1.51 0.99
219_V 244_G 1.506 0.99
135_Y 187_L 1.499 0.99
135_Y 254_G 1.493 0.99
75_M 136_A 1.489 0.99
80_M 93_L 1.478 0.99
231_G 234_G 1.449 0.98
12_Y 45_H 1.443 0.98
160_L 163_N 1.441 0.98
145_A 176_M 1.436 0.98
77_C 100_A 1.417 0.98
43_V 47_I 1.409 0.98
226_G 232_W 1.384 0.98
251_A 254_G 1.373 0.98
68_V 252_Y 1.372 0.98
202_F 206_N 1.358 0.97
39_V 81_T 1.356 0.97
42_L 74_L 1.355 0.97
45_H 70_S 1.35 0.97
206_N 225_W 1.33 0.97
210_A 225_W 1.327 0.97
95_I 147_Q 1.318 0.97
141_A 241_N 1.315 0.97
122_P 126_V 1.314 0.97
144_Y 172_I 1.303 0.96
195_L 201_L 1.302 0.96
202_F 210_A 1.292 0.96
206_N 210_A 1.29 0.96
189_L 193_T 1.289 0.96
146_L 242_V 1.285 0.96
19_I 93_L 1.279 0.96
212_L 255_S 1.276 0.96
173_E 238_V 1.264 0.96
46_A 49_L 1.257 0.95
15_S 19_I 1.25 0.95
155_L 158_K 1.224 0.95
135_Y 209_K 1.217 0.94
134_S 146_L 1.203 0.94
111_P 134_S 1.194 0.94
15_S 18_L 1.193 0.93
218_F 222_V 1.192 0.93
86_R 132_L 1.19 0.93
41_A 100_A 1.186 0.93
77_C 81_T 1.182 0.93
61_Q 67_N 1.179 0.93
254_G 258_V 1.179 0.93
36_I 40_I 1.171 0.93
173_E 227_H 1.169 0.93
180_T 241_N 1.166 0.92
227_H 231_G 1.162 0.92
94_P 98_A 1.16 0.92
187_L 193_T 1.154 0.92
198_M 206_N 1.152 0.92
25_Q 28_G 1.149 0.92
152_D 169_L 1.146 0.92
255_S 259_Q 1.145 0.92
42_L 45_H 1.145 0.92
13_S 17_A 1.142 0.91
45_H 77_C 1.139 0.91
148_L 238_V 1.135 0.91
245_A 249_T 1.132 0.91
52_R 67_N 1.128 0.91
42_L 46_A 1.124 0.91
184_V 188_T 1.124 0.91
218_F 221_I 1.123 0.90
176_M 241_N 1.12 0.90
29_G 33_M 1.116 0.90
98_A 101_L 1.102 0.89
11_A 41_A 1.102 0.89
17_A 21_P 1.1 0.89
145_A 241_N 1.087 0.88
195_L 203_S 1.081 0.88
47_I 50_E 1.078 0.88
173_E 232_W 1.066 0.87
21_P 30_W 1.066 0.87
239_W 242_V 1.064 0.87
197_Y 206_N 1.053 0.86
173_E 177_F 1.053 0.86
202_F 207_I 1.049 0.86
173_E 176_M 1.046 0.86
201_L 206_N 1.043 0.86
145_A 242_V 1.036 0.85
198_M 210_A 1.035 0.85
203_S 225_W 1.034 0.85
117_H 195_L 1.03 0.85
121_T 212_L 1.023 0.84
219_V 247_I 1.023 0.84
145_A 237_V 1.019 0.84
50_E 54_L 1.013 0.83
198_M 207_I 1.013 0.83
119_E 197_Y 1.012 0.83
96_V 99_F 1.003 0.82
123_G 202_F 1.002 0.82
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Scaled Score = (raw_score/average(raw_scores)) > 1 are listed. For all 3L/2 predictions, click on one of the links below.
HHsearch Results:
PDB Chains Cov P(%) HHΔ   Acc
1zcdA20.36123.80.967Contact Map0.116
2jqtA10.23192.80.969Contact Map0.268
2m20A20.19392.10.971Contact Map0
2l2tA20.167320.972Contact Map0
3ra3B20.09131.90.972Contact Map0.814
3b5dA20.39921.90.972Contact Map0.144
3arcX20.14831.80.973Contact Map0
2jwaA20.16731.50.974Contact Map0
3giaA10.57791.40.974Contact Map0.108
1bdeA10.13311.40.974Contact Map0.428
Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.
Page generated in 0.5093 seconds.