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OPENSEQ.org
YOHJ - UPF0299 membrane protein YohJ
UniProt: P60632 Sequence
 Download Alignment
We filter this alignment to remove sites that have > 75% gaps before running GREMLIN.
EcoGene: EG12023
Length: 132 (117)
Sequences: 856
Seq/Len: 7.32
YOHJ
Paralog alert: 0.34 [within 20: 0.00] - ratio of genomes with paralogs
GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Scaled Score Prob
21_C 49_L 3.592 1.00
29_A 41_I 1.957 1.00
112_S 116_Q 1.929 1.00
41_I 45_I 1.844 1.00
57_A 60_V 1.83 1.00
109_L 113_W 1.711 1.00
48_V 52_L 1.677 1.00
110_V 114_S 1.571 1.00
95_P 99_S 1.46 0.99
21_C 45_I 1.455 0.99
44_L 48_V 1.409 0.99
113_W 116_Q 1.391 0.99
24_A 49_L 1.385 0.99
45_I 106_V 1.382 0.99
13_R 59_W 1.359 0.99
56_P 59_W 1.359 0.99
43_M 74_L 1.345 0.98
53_Q 56_P 1.342 0.98
27_F 31_L 1.334 0.98
72_A 76_V 1.33 0.98
13_R 17_L 1.315 0.98
45_I 49_L 1.303 0.98
92_Q 95_P 1.27 0.97
22_L 39_S 1.265 0.97
39_S 74_L 1.262 0.97
60_V 64_C 1.26 0.97
47_F 51_A 1.235 0.97
61_N 85_Y 1.222 0.97
21_C 25_G 1.22 0.97
29_A 33_P 1.218 0.97
25_G 38_G 1.216 0.96
87_D 91_A 1.192 0.96
23_Y 47_F 1.183 0.96
37_P 78_I 1.173 0.95
83_M 86_F 1.169 0.95
73_L 88_L 1.164 0.95
49_L 54_I 1.152 0.95
82_V 86_F 1.142 0.94
43_M 79_G 1.134 0.94
20_A 24_A 1.131 0.94
25_G 81_G 1.131 0.94
21_C 24_A 1.113 0.93
57_A 96_V 1.087 0.92
19_Y 25_G 1.083 0.92
98_V 102_V 1.077 0.92
28_I 45_I 1.076 0.92
64_C 71_M 1.075 0.92
102_V 106_V 1.074 0.92
66_V 76_V 1.071 0.92
82_V 85_Y 1.069 0.92
89_L 96_V 1.067 0.91
36_I 42_G 1.063 0.91
69_R 78_I 1.061 0.91
79_G 86_F 1.059 0.91
60_V 68_I 1.048 0.90
51_A 112_S 1.043 0.90
57_A 61_N 1.043 0.90
14_A 63_G 1.035 0.90
23_Y 105_L 1.035 0.90
105_L 109_L 1.025 0.89
29_A 38_G 1.023 0.89
38_G 81_G 1.014 0.88
94_G 102_V 1.013 0.88
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Scaled Score = (raw_score/average(raw_scores)) > 1 are listed. For all 3L/2 predictions, click on one of the links below.
HHsearch Results:
PDB Chains Cov P(%) HHΔ   Acc
2kncA10.386456.40.905Contact Map0.245
4bwzA10.924240.60.913Contact Map0.248
4k0jA6135.80.916Contact Map0.184
4j72A20.515227.80.92Contact Map0.423
2kv5A10.2523.60.923Contact Map0.424
2kluA10.325820.70.925Contact Map0.325
3aqpA20.916716.60.928Contact Map0.33
4b19A10.227314.10.93Contact Map0.246
3qnqA40.893913.70.931Contact Map0.364
3ne5A10.909112.90.932Contact Map0.226
Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.
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