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OPENSEQ.org
YBAM - Uncharacterized protein YbaM
UniProt: P45807 Sequence
 Download Alignment
We filter this alignment to remove sites that have > 75% gaps before running GREMLIN.
EcoGene: EG12830
Length: 53 (49)
Sequences: 113
Seq/Len: 2.31
YBAM
Paralog alert: 0.00 [within 20: 0.00] - ratio of genomes with paralogs
GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Scaled Score Prob
35_D 38_K 3.188 1.00
43_K 46_T 2.36 1.00
18_V 22_E 2.03 0.99
9_D 32_R 1.802 0.98
8_D 11_K 1.722 0.97
27_A 45_L 1.678 0.97
8_D 29_T 1.662 0.97
3_L 11_K 1.522 0.94
9_D 19_L 1.493 0.93
30_V 41_Y 1.475 0.92
9_D 31_L 1.4 0.89
8_D 25_I 1.327 0.86
25_I 37_V 1.286 0.83
36_I 41_Y 1.282 0.83
31_L 38_K 1.199 0.77
8_D 23_N 1.195 0.76
28_S 47_R 1.162 0.73
24_Q 28_S 1.128 0.70
28_S 32_R 1.098 0.67
1_M 41_Y 1.092 0.67
23_N 32_R 1.069 0.64
18_V 38_K 1.036 0.61
7_P 42_E 1.033 0.60
25_I 30_V 1.002 0.57
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Scaled Score = (raw_score/average(raw_scores)) > 1 are listed. For all 3L/2 predictions, click on one of the links below.
HHsearch Results:
PDB Chains Cov P(%) HHΔ   Acc
2j7nA216.90.893Contact Map0.021
1xhoA316.60.894Contact Map0.115
2a1dD20.33965.10.899Contact Map0
4bndA10.41514.60.901Contact Map0.379
3pgvA40.7174.60.901Contact Map0.166
1nu7D20.33964.40.902Contact Map0
1dbfA314.30.902Contact Map0.096
1ufyA113.90.905Contact Map0.056
3qaeA10.69813.80.905Contact Map
2qtcA213.80.905Contact Map0.112
Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.
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