OPENSEQ.org - PTPC2 - ECOLI GREMLIN

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PTPC2 - Putative N-acetylgalactosamine permease IIC component 2

UniProt:	P42905	Sequence MEISLLQAFALGIIAFIAGLDMFNGLTHMHRPVVLGPLVGLVLGDLHTGILTGGTLELVWMGLAPLAGAQPPNVIIGTIVGTAFAITTGVKPDVAVGVAVPFAVAVQMGITFLFSVMSGVMSRCDLATNPRRI	Download Alignment We filter this alignment to remove sites that have > 75% gaps before running GREMLIN.
EcoGene:	EG12765
Length:	133 (131)
Sequences:	694
Seq/Len:	5.30

PTPC2
Paralog alert: 0.85 [within 20: 0.14] - ratio of genomes with paralogs

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Scaled Score	Prob
45_D	48_T	4.578	1.00
41_L	46_L	3.045	1.00
8_A	12_G	3.038	1.00
31_R	57_E	2.963	1.00
123_R	126_L	2.534	1.00
36_G	49_G	2.473	1.00
14_I	38_L	2.392	1.00
14_I	42_V	2.177	1.00
5_L	9_F	2.102	1.00
76_I	106_V	1.923	1.00
38_L	42_V	1.738	1.00
43_L	87_T	1.698	1.00
23_F	70_Q	1.661	0.99
11_L	39_V	1.607	0.99
123_R	127_A	1.558	0.99
6_L	10_A	1.482	0.99
122_S	125_D	1.398	0.98
37_P	46_L	1.395	0.98
62_G	101_P	1.389	0.98
7_Q	11_L	1.374	0.97
55_T	59_V	1.355	0.97
4_S	7_Q	1.339	0.97
35_L	79_I	1.334	0.97
48_T	52_T	1.326	0.96
94_V	97_G	1.323	0.96
85_A	95_A	1.305	0.96
33_V	37_P	1.293	0.96
49_G	53_G	1.28	0.95
7_Q	10_A	1.258	0.95
7_Q	42_V	1.256	0.95
47_H	51_L	1.233	0.94
7_Q	87_T	1.218	0.94
101_P	105_A	1.199	0.93
21_D	29_M	1.183	0.92
14_I	35_L	1.181	0.92
126_L	129_N	1.18	0.92
80_V	84_F	1.166	0.92
72_P	103_A	1.156	0.91
15_A	19_G	1.139	0.90
6_L	9_F	1.138	0.90
77_G	83_A	1.129	0.90
104_V	107_Q	1.129	0.90
98_V	102_F	1.128	0.90
17_I	29_M	1.121	0.89
116_V	119_G	1.113	0.89
116_V	120_V	1.086	0.87
5_L	8_A	1.048	0.85
48_T	86_I	1.042	0.84
34_V	38_L	1.036	0.84
5_L	93_D	1.03	0.83
61_M	75_I	1.023	0.83
85_A	91_K	1.018	0.82
104_V	108_M	1.008	0.81
77_G	103_A	1.006	0.81

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Scaled Score = (raw_score/average(raw_scores)) > 1 are listed. For all 3L/2 predictions, click on one of the links below.

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling

HHsearch Results:

PDB	Chains	Cov	P(%)	HHΔ		Acc
2c9kA	1	0.3835	1.2	0.959	Contact Map	0.531
3effK	4	0.8421	1	0.962	Contact Map	0.36
2f93B	1	0.7669	0.9	0.963	Contact Map	0.213
1orqC	1	0.6842	0.8	0.965	Contact Map	0.482
1ji6A	1	0.3759	0.7	0.965	Contact Map	0.48
1pp5A	1	0.1579	0.6	0.967	Contact Map	0
2eq8C	2	0.1128	0.6	0.967	Contact Map	0.75
4a01A	2	0.985	0.6	0.968	Contact Map	0.3
3p87G	6	0.1654	0.5	0.968	Contact Map	1
2a9hA	4	0.8045	0.5	0.969	Contact Map	0.211

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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