May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org
YGJP - Uncharacterized protein YgjP
UniProt: P42597 Sequence
 Download Alignment
We filter this alignment to remove sites that have > 75% gaps before running GREMLIN.
EcoGene: EG12727
Length: 167 (163)
Sequences: 191
Seq/Len: 1.17
YGJP
Paralog alert: 0.00 [within 20: 0.00] - ratio of genomes with paralogs
GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Scaled Score Prob
116_R 143_E 2.406 0.99
75_H 79_N 1.995 0.97
114_F 118_I 1.987 0.96
74_I 129_K 1.918 0.95
74_I 99_V 1.893 0.95
22_I 162_L 1.816 0.93
19_R 23_N 1.691 0.90
57_Q 108_R 1.599 0.86
107_F 118_I 1.597 0.86
20_T 70_Y 1.553 0.84
69_M 103_V 1.545 0.83
61_N 64_P 1.541 0.83
88_S 95_L 1.502 0.81
106_V 160_L 1.441 0.77
67_K 100_E 1.428 0.76
86_A 99_V 1.417 0.75
8_Q 45_K 1.395 0.74
99_V 129_K 1.389 0.73
74_I 112_E 1.369 0.72
52_Q 108_R 1.366 0.71
74_I 83_L 1.342 0.69
86_A 97_A 1.324 0.68
67_K 102_R 1.3 0.66
129_K 132_N 1.287 0.65
22_I 25_Q 1.283 0.64
57_Q 137_Q 1.278 0.64
42_A 56_N 1.277 0.64
31_L 44_D 1.272 0.63
23_N 137_Q 1.258 0.62
45_K 137_Q 1.253 0.62
95_L 118_I 1.226 0.59
75_H 160_L 1.22 0.59
43_T 48_W 1.219 0.59
14_L 151_F 1.217 0.58
87_V 98_K 1.216 0.58
156_W 160_L 1.215 0.58
86_A 129_K 1.208 0.57
9_G 155_L 1.207 0.57
59_L 157_L 1.195 0.56
42_A 99_V 1.194 0.56
143_E 149_L 1.194 0.56
83_L 126_L 1.193 0.56
43_T 69_M 1.191 0.56
2_S 161_S 1.191 0.56
75_H 78_K 1.186 0.55
64_P 155_L 1.173 0.54
9_G 15_L 1.17 0.54
137_Q 140_C 1.17 0.54
76_V 79_N 1.168 0.54
105_T 127_K 1.168 0.54
87_V 100_E 1.143 0.51
23_N 50_Y 1.142 0.51
37_G 127_K 1.135 0.50
75_H 93_G 1.127 0.50
29_D 70_Y 1.126 0.50
107_F 144_P 1.126 0.50
8_Q 93_G 1.119 0.49
108_R 147_H 1.115 0.49
73_K 77_L 1.103 0.47
59_L 114_F 1.102 0.47
7_L 97_A 1.097 0.47
107_F 114_F 1.096 0.47
51_T 132_N 1.091 0.46
56_N 129_K 1.075 0.45
34_R 51_T 1.066 0.44
16_S 19_R 1.062 0.43
12_E 16_S 1.062 0.43
56_N 66_N 1.06 0.43
34_R 102_R 1.057 0.43
137_Q 141_H 1.057 0.43
7_L 157_L 1.052 0.42
67_K 108_R 1.043 0.42
34_R 86_A 1.041 0.41
83_L 99_V 1.036 0.41
42_A 160_L 1.035 0.41
100_E 151_F 1.033 0.41
60_R 97_A 1.03 0.40
95_L 107_F 1.03 0.40
153_T 157_L 1.03 0.40
56_N 94_K 1.027 0.40
26_R 141_H 1.023 0.40
23_N 37_G 1.018 0.39
95_L 114_F 1.01 0.39
65_I 145_Q 1.006 0.38
80_A 84_H 1.006 0.38
48_W 60_R 1.003 0.38
85_T 114_F 1.003 0.38
13_Q 24_E 1.002 0.38
62_A 86_A 1.002 0.38
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Scaled Score = (raw_score/average(raw_scores)) > 1 are listed. For all 3L/2 predictions, click on one of the links below.
HHsearch Results: GREMLIN results overlayed on top 10 PDB hits:
Legend: Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on 10 HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov P(%) HHΔ   Acc
4jixA20.580899.40.843Contact Map0.315
4jiuA10.562999.30.845Contact Map0.241
3cqbA20.5988920.94Contact Map0
3c37A20.784476.40.952Contact Map0.055
2lh0A20.377225.60.966Contact Map0.229
3thxB10.323413.90.97Contact Map0.11
1iq8A20.86839.40.972Contact Map0.087
3dteA10.67078.30.972Contact Map0.145
2p0tA10.311460.974Contact Map0.314
4anjA10.706660.974Contact Map0.001
Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.
Page generated in 0.6482 seconds.