| UniProt: | P39306 | Sequence |
Download Alignment We filter this alignment to remove sites that have > 75% gaps before running GREMLIN. |
| EcoGene: | EG12498 | ||
| Length: | 228 (219) | ||
| Sequences: | 2881 | ||
| Seq/Len: | 13.16 |
| ULAF
Paralog alert: 0.64 [within 20: 0.04] - ratio of genomes with paralogs Cluster includes: ARAD FUCA RHAD SGBE ULAF YGBL |
Legend: The darker and larger the blue dots, the higher coevolution strength.
Residue pairs sorted by coevolution strength:
| i | j | Scaled Score | Prob | |
| 59_D | 63_K | 5.728 | 1.00 | |
| 98_H | 195_I | 3.323 | 1.00 | |
| 174_K | 178_D | 3.213 | 1.00 | |
| 191_K | 195_I | 2.852 | 1.00 | |
| 38_V | 79_L | 2.638 | 1.00 | |
| 39_V | 55_M | 2.637 | 1.00 | |
| 107_L | 197_R | 2.52 | 1.00 | |
| 9_F | 52_A | 2.446 | 1.00 | |
| 7_Q | 177_H | 2.353 | 1.00 | |
| 37_L | 57_V | 2.293 | 1.00 | |
| 6_Q | 10_E | 2.204 | 1.00 | |
| 88_L | 172_W | 2.151 | 1.00 | |
| 37_L | 65_V | 1.998 | 1.00 | |
| 97_T | 191_K | 1.936 | 1.00 | |
| 98_H | 194_W | 1.896 | 1.00 | |
| 161_G | 186_M | 1.896 | 1.00 | |
| 208_S | 212_N | 1.883 | 1.00 | |
| 98_H | 191_K | 1.866 | 1.00 | |
| 101_A | 195_I | 1.864 | 1.00 | |
| 90_G | 176_A | 1.833 | 1.00 | |
| 30_A | 176_A | 1.824 | 1.00 | |
| 207_D | 210_L | 1.815 | 1.00 | |
| 4_L | 30_A | 1.788 | 1.00 | |
| 175_D | 178_D | 1.778 | 1.00 | |
| 92_V | 179_A | 1.744 | 1.00 | |
| 89_G | 175_D | 1.734 | 1.00 | |
| 61_S | 83_R | 1.654 | 1.00 | |
| 169_P | 186_M | 1.653 | 1.00 | |
| 6_Q | 52_A | 1.644 | 1.00 | |
| 80_E | 84_R | 1.644 | 1.00 | |
| 80_E | 145_K | 1.64 | 1.00 | |
| 39_V | 57_V | 1.622 | 1.00 | |
| 51_K | 54_D | 1.606 | 1.00 | |
| 9_F | 13_M | 1.599 | 1.00 | |
| 108_A | 123_D | 1.534 | 1.00 | |
| 32_D | 39_V | 1.53 | 1.00 | |
| 141_L | 145_K | 1.523 | 1.00 | |
| 102_W | 197_R | 1.512 | 1.00 | |
| 106_G | 165_Y | 1.471 | 1.00 | |
| 209_F | 213_K | 1.458 | 1.00 | |
| 195_I | 198_G | 1.452 | 1.00 | |
| 80_E | 83_R | 1.445 | 1.00 | |
| 38_V | 60_M | 1.412 | 1.00 | |
| 99_A | 169_P | 1.41 | 1.00 | |
| 8_V | 28_V | 1.398 | 0.99 | |
| 97_T | 101_A | 1.396 | 0.99 | |
| 173_G | 178_D | 1.394 | 0.99 | |
| 87_S | 157_L | 1.385 | 0.99 | |
| 3_K | 7_Q | 1.376 | 0.99 | |
| 79_L | 83_R | 1.37 | 0.99 | |
| 96_S | 99_A | 1.369 | 0.99 | |
| 14_E | 18_Y | 1.367 | 0.99 | |
| 149_E | 152_G | 1.364 | 0.99 | |
| 169_P | 183_A | 1.363 | 0.99 | |
| 108_A | 126_C | 1.351 | 0.99 | |
| 171_A | 183_A | 1.35 | 0.99 | |
| 94_T | 183_A | 1.343 | 0.99 | |
| 18_Y | 184_V | 1.332 | 0.99 | |
| 125_P | 154_A | 1.329 | 0.99 | |
| 145_K | 149_E | 1.313 | 0.99 | |
| 155_E | 158_H | 1.301 | 0.99 | |
| 161_G | 171_A | 1.289 | 0.99 | |
| 95_H | 167_H | 1.288 | 0.99 | |
| 13_M | 17_R | 1.274 | 0.99 | |
| 8_V | 55_M | 1.271 | 0.99 | |
| 93_H | 167_H | 1.261 | 0.99 | |
| 100_T | 103_A | 1.253 | 0.99 | |
| 109_I | 190_A | 1.252 | 0.99 | |
| 128_R | 149_E | 1.25 | 0.99 | |
| 105_A | 199_I | 1.236 | 0.98 | |
| 194_W | 198_G | 1.218 | 0.98 | |
| 84_R | 152_G | 1.216 | 0.98 | |
| 58_V | 75_T | 1.205 | 0.98 | |
| 11_A | 180_V | 1.195 | 0.98 | |
| 81_L | 88_L | 1.187 | 0.98 | |
| 187_E | 191_K | 1.184 | 0.98 | |
| 30_A | 90_G | 1.175 | 0.98 | |
| 50_M | 54_D | 1.168 | 0.97 | |
| 188_E | 191_K | 1.162 | 0.97 | |
| 206_I | 210_L | 1.155 | 0.97 | |
| 173_G | 182_N | 1.15 | 0.97 | |
| 193_A | 197_R | 1.148 | 0.97 | |
| 85_Y | 88_L | 1.148 | 0.97 | |
| 64_V | 67_G | 1.138 | 0.97 | |
| 194_W | 199_I | 1.138 | 0.97 | |
| 77_T | 170_F | 1.137 | 0.97 | |
| 147_I | 164_V | 1.135 | 0.97 | |
| 132_E | 136_Q | 1.125 | 0.97 | |
| 15_L | 180_V | 1.118 | 0.96 | |
| 110_P | 193_A | 1.113 | 0.96 | |
| 15_L | 92_V | 1.113 | 0.96 | |
| 84_R | 148_I | 1.093 | 0.96 | |
| 1_M | 37_L | 1.082 | 0.96 | |
| 164_V | 170_F | 1.076 | 0.95 | |
| 59_D | 65_V | 1.076 | 0.95 | |
| 158_H | 215_F | 1.068 | 0.95 | |
| 32_D | 57_V | 1.065 | 0.95 | |
| 97_T | 195_I | 1.065 | 0.95 | |
| 116_H | 121_F | 1.051 | 0.94 | |
| 14_E | 17_R | 1.046 | 0.94 | |
| 160_P | 182_N | 1.038 | 0.94 | |
| 54_D | 69_Y | 1.034 | 0.94 | |
| 151_L | 172_W | 1.034 | 0.94 | |
| 42_P | 45_V | 1.032 | 0.94 | |
| 10_E | 49_T | 1.03 | 0.94 | |
| 146_V | 149_E | 1.023 | 0.93 | |
| 38_V | 75_T | 1.021 | 0.93 | |
| 9_F | 55_M | 1.02 | 0.93 | |
| 85_Y | 172_W | 1.007 | 0.93 | |
| 45_V | 54_D | 1.006 | 0.93 | |
| 5_K | 66_E | 1.002 | 0.92 |
- Text file of predictions (all 3L/2 predictions)
- Generate restraints for ROSETTA Structure Modeling
Legend: Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on 10 HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
| PDB | Chains | Cov | P(%) | HHΔ | Acc | |
| 1k0wA | 6 | 0.9956 | 100 | 0.122 | Contact Map | 0.81 |
| 1e4cP | 1 | 0.9167 | 100 | 0.165 | Contact Map | 0.712 |
| 3ocrA | 2 | 0.9518 | 100 | 0.187 | Contact Map | 0.673 |
| 2opiA | 2 | 0.8904 | 100 | 0.192 | Contact Map | 0.678 |
| 1pvtA | 1 | 0.8728 | 100 | 0.221 | Contact Map | 0.57 |
| 2v9lA | 1 | 0.9474 | 100 | 0.221 | Contact Map | 0.611 |
| 2z7bA | 1 | 0.9474 | 100 | 0.224 | Contact Map | 0.689 |
| 2fk5A | 2 | 0.8377 | 100 | 0.237 | Contact Map | 0.64 |
| 2irpA | 2 | 0.8333 | 100 | 0.246 | Contact Map | 0.718 |
| 3m4rA | 1 | 0.7895 | 100 | 0.347 | Contact Map | 0.608 |
Sequence Conservation (Image Generated using WebLogo v3)