May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org
YGGL - Uncharacterized protein YggL
UniProt: P38521 Sequence
 Download Alignment
We filter this alignment to remove sites that have > 75% gaps before running GREMLIN.
EcoGene: EG12443
Length: 108 (108)
Sequences: 128
Seq/Len: 1.19
YGGL
Paralog alert: 0.02 [within 20: 0.00] - ratio of genomes with paralogs
GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Scaled Score Prob
44_D 92_R 2.345 0.99
6_S 9_L 2.275 0.99
83_A 87_K 2.253 0.99
6_S 16_D 2.137 0.98
34_S 86_R 2.082 0.98
53_N 81_H 1.699 0.90
87_K 91_E 1.669 0.89
28_R 96_E 1.561 0.84
13_M 42_V 1.474 0.80
42_V 76_K 1.416 0.76
41_T 74_I 1.384 0.73
74_I 105_V 1.365 0.72
36_E 69_I 1.338 0.70
86_R 90_E 1.328 0.69
39_D 85_V 1.317 0.68
41_T 48_E 1.299 0.66
13_M 82_Q 1.285 0.65
20_E 106_W 1.265 0.63
40_K 45_F 1.171 0.54
87_K 95_D 1.17 0.54
27_W 74_I 1.168 0.54
79_E 82_Q 1.166 0.54
74_I 100_S 1.165 0.54
47_N 51_E 1.163 0.54
25_V 81_H 1.159 0.53
10_R 20_E 1.156 0.53
58_D 69_I 1.151 0.53
54_K 73_E 1.15 0.52
42_V 79_E 1.144 0.52
6_S 72_Q 1.14 0.51
68_L 73_E 1.132 0.51
21_L 31_E 1.119 0.49
39_D 70_C 1.111 0.49
83_A 99_T 1.11 0.49
82_Q 98_R 1.1 0.48
6_S 10_R 1.1 0.48
4_N 87_K 1.085 0.46
45_F 64_A 1.076 0.45
16_D 35_E 1.075 0.45
16_D 28_R 1.069 0.45
70_C 81_H 1.06 0.44
9_L 16_D 1.057 0.43
50_I 81_H 1.055 0.43
5_R 9_L 1.051 0.43
9_L 24_S 1.05 0.43
65_W 77_C 1.047 0.42
6_S 20_E 1.041 0.42
8_R 11_K 1.03 0.41
8_R 12_K 1.03 0.41
31_E 99_T 1.026 0.40
10_R 75_G 1.019 0.40
13_M 48_E 1.018 0.40
29_F 38_I 1.017 0.40
4_N 81_H 1.014 0.39
78_T 98_R 1.013 0.39
61_G 101_E 1.01 0.39
69_I 99_T 1.006 0.39
30_P 95_D 1.005 0.39
7_R 18_F 1.002 0.38
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Scaled Score = (raw_score/average(raw_scores)) > 1 are listed. For all 3L/2 predictions, click on one of the links below.
HHsearch Results:
PDB Chains Cov P(%) HHΔ   Acc
3qd7X10.851939.20.926Contact Map0.128
2zqeA10.657438.30.927Contact Map0.248
4bpuA20.96325.50.933Contact Map0.228
3kdwA10.8704250.933Contact Map0.114
3h99A10.96321.40.936Contact Map0.036
2v6zM10.6296200.936Contact Map0.093
4el8A10.731519.90.936Contact Map0.088
1szqA20.888919.30.937Contact Map0.264
3tweA20.148117.80.938Contact Map0.675
1rqgA10.944417.50.938Contact Map0.058
Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.
Page generated in 1.0692 seconds.