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YBGD - Uncharacterized fimbrial-like protein YbgD
UniProt: P37909 Sequence
 Download Alignment
We filter this alignment to remove sites that have > 75% gaps before running GREMLIN.
EcoGene: EG12359
Length: 188 (178)
Sequences: 1414
Seq/Len: 7.94
YBGD
Paralog alert: 0.94 [within 20: 0.77] - ratio of genomes with paralogs
Cluster includes: ELFA FIMA1 FIMF FIMG FIMI SFMA SFMF YADN YBGD YCBU YCBV YDER YDES YFCP YFCV YGIL YRAH
GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Scaled Score Prob
127_V 161_A 3.289 1.00
97_V 185_L 2.878 1.00
128_R 162_W 2.744 1.00
123_T 173_T 2.576 1.00
128_R 164_E 2.576 1.00
113_L 126_G 2.422 1.00
45_H 79_I 2.394 1.00
114_L 139_L 2.319 1.00
163_M 177_V 2.31 1.00
75_D 156_T 2.193 1.00
130_M 162_W 2.191 1.00
43_E 80_N 2.142 1.00
45_H 77_R 2.037 1.00
45_H 48_D 2.031 1.00
124_G 172_V 2.029 1.00
116_N 177_V 1.876 1.00
131_D 135_G 1.837 1.00
114_L 181_A 1.761 1.00
99_V 157_L 1.744 1.00
128_R 136_N 1.629 1.00
127_V 179_A 1.592 1.00
48_D 77_R 1.507 1.00
65_R 68_H 1.486 0.99
55_L 177_V 1.455 0.99
75_D 158_N 1.438 0.99
63_I 165_Q 1.425 0.99
39_E 60_T 1.419 0.99
125_V 163_M 1.35 0.99
73_A 160_F 1.345 0.99
48_D 51_K 1.345 0.99
9_A 12_A 1.34 0.99
7_T 10_A 1.333 0.99
36_E 57_Q 1.327 0.99
5_Q 8_L 1.32 0.98
105_A 112_P 1.312 0.98
55_L 163_M 1.286 0.98
114_L 127_V 1.277 0.98
114_L 179_A 1.277 0.98
63_I 168_N 1.27 0.98
124_G 170_V 1.266 0.98
51_K 183_Y 1.259 0.98
51_K 76_I 1.237 0.97
6_K 9_A 1.232 0.97
122_A 125_V 1.224 0.97
77_R 156_T 1.217 0.97
37_V 58_V 1.215 0.97
18_T 22_Y 1.206 0.97
41_P 155_Q 1.199 0.97
19_A 22_Y 1.198 0.97
113_L 164_E 1.193 0.97
63_I 125_V 1.191 0.96
134_D 160_F 1.186 0.96
56_G 177_V 1.174 0.96
8_L 11_L 1.174 0.96
74_V 129_L 1.171 0.96
9_A 14_S 1.16 0.96
63_I 172_V 1.16 0.96
68_H 162_W 1.142 0.95
18_T 21_V 1.14 0.95
103_S 114_L 1.139 0.95
138_V 141_S 1.125 0.95
10_A 20_P 1.118 0.94
159_F 183_Y 1.117 0.94
73_A 158_N 1.117 0.94
165_Q 172_V 1.111 0.94
113_L 128_R 1.109 0.94
96_K 147_D 1.103 0.94
25_D 28_S 1.093 0.94
43_E 79_I 1.092 0.94
10_A 15_L 1.091 0.94
4_G 10_A 1.089 0.93
58_V 163_M 1.082 0.93
64_N 68_H 1.081 0.93
98_G 186_D 1.064 0.92
6_K 18_T 1.062 0.92
17_F 20_P 1.05 0.92
55_L 128_R 1.043 0.91
160_F 179_A 1.041 0.91
32_H 180_N 1.034 0.91
111_T 138_V 1.026 0.90
100_T 186_D 1.015 0.90
52_N 152_S 1.014 0.90
34_K 54_D 1.001 0.89
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Scaled Score = (raw_score/average(raw_scores)) > 1 are listed. For all 3L/2 predictions, click on one of the links below.
HHsearch Results: GREMLIN results overlayed on top 10 PDB hits:
Legend: Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on 10 HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov P(%) HHΔ   Acc
2jmrA10.79791000.277Contact Map0.603
2uy6B20.84571000.282Contact Map0.847
2xg5B10.92021000.284Contact Map0.707
2jtyA10.81381000.292Contact Map0.696
1pdkB10.77661000.316Contact Map0.689
3bwuF10.728799.90.375Contact Map0.75
4dwhB20.728799.90.378Contact Map0.763
2w07B10.760699.90.384Contact Map0.693
3bfqG10.696899.90.405Contact Map0.688
3jwnH20.845799.90.44Contact Map0.677
Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.
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