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OPENSEQ.org

BCSB - Cyclic di-GMP-binding protein
UniProt: P37652 Sequence
Download Alignment
We filter this alignment to remove sites that have > 75% gaps before running GREMLIN.
EcoGene: EG12259
Length: 779 (772)
Sequences: 177
Seq/Len: 0.23

BCSB
Paralog alert: 0.07 [within 20: 0.04] - ratio of genomes with paralogs
GREMLIN Results:
  • No predictions exist for P37652
  • Not enough sequences to perform GREMLIN analysis on (0.23 < 1)
HHsearch Results: GREMLIN results overlayed on top 10 PDB hits:
Legend: Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on 10 HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov P(%) HHΔ   Acc
4hg6B10.81391000.604Contact Map
1zzaA10.064247.70.987Contact Map
1pi7A10.046226.80.988Contact Map
2kluA10.053924.10.989Contact Map
3bwuD10.1502200.989Contact Map
2kncA10.062915.80.989Contact Map
1j5kA10.110415.40.99Contact Map
2l2tA20.053914.60.99Contact Map
2w47A10.18113.10.99Contact Map
2w87A20.1605110.99Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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