May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org

BCSC - Cellulose synthase operon protein C
UniProt: P37650 Sequence
Download Alignment
We filter this alignment to remove sites that have > 75% gaps before running GREMLIN.
EcoGene: EG12257
Length: 1157 (1156)
Sequences: 167
Seq/Len: 0.14

BCSC
Paralog alert: 0.07 [within 20: 0.02] - ratio of genomes with paralogs
GREMLIN Results:
  • No predictions exist for P37650
  • Not enough sequences to perform GREMLIN analysis on (0.14 < 1)
HHsearch Results: GREMLIN results overlayed on top 10 PDB hits:
Legend: Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on 10 HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov P(%) HHΔ   Acc
4kvmA40.54541000.871Contact Map
4bujB20.65081000.876Contact Map
1w3bA20.33451000.892Contact Map
2xpiA20.45381000.897Contact Map
3fp2A10.44081000.906Contact Map
2gw1A20.41311000.907Contact Map
2y4tA30.36211000.913Contact Map
4horA10.37861000.914Contact Map
4m59A20.57481000.916Contact Map
4e6hA10.49521000.917Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

Page generated in 2.0102 seconds.