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OPENSEQ.org
YOHD - Inner membrane protein YohD
UniProt: P33366 Sequence
 Download Alignment
We filter this alignment to remove sites that have > 75% gaps before running GREMLIN.
EcoGene: EG12017
Length: 192 (161)
Sequences: 1851
Seq/Len: 11.50
YOHD
Paralog alert: 0.59 [within 20: 0.03] - ratio of genomes with paralogs
Cluster includes: DEDA YABI YGHB YOHD YQJA
GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Scaled Score Prob
57_Q 120_P 2.85 1.00
91_H 94_L 2.793 1.00
40_K 43_L 2.751 1.00
34_A 143_Y 2.532 1.00
49_A 132_F 2.348 1.00
97_I 129_L 2.311 1.00
41_F 140_T 2.3 1.00
85_Q 89_Q 2.224 1.00
45_V 136_L 2.219 1.00
47_S 51_G 2.09 1.00
48_V 135_A 1.979 1.00
68_G 85_Q 1.874 1.00
30_G 44_V 1.857 1.00
41_F 139_T 1.846 1.00
77_H 80_K 1.736 1.00
119_P 122_I 1.684 1.00
63_G 115_A 1.657 1.00
82_E 86_K 1.609 1.00
16_V 50_L 1.602 1.00
93_Y 122_I 1.589 1.00
12_Y 39_L 1.579 1.00
53_M 128_I 1.575 1.00
35_H 147_Q 1.571 1.00
24_E 106_R 1.563 1.00
57_Q 124_L 1.499 1.00
59_L 111_T 1.497 1.00
46_L 50_L 1.444 1.00
5_T 9_Q 1.439 1.00
42_P 140_T 1.437 1.00
10_Y 14_A 1.434 1.00
124_L 128_I 1.423 1.00
41_F 45_V 1.401 0.99
127_N 131_A 1.369 0.99
45_V 139_T 1.366 0.99
12_Y 40_K 1.366 0.99
64_R 117_Q 1.362 0.99
94_L 98_G 1.357 0.99
27_T 139_T 1.353 0.99
45_V 140_T 1.29 0.99
20_L 58_V 1.276 0.99
29_L 32_V 1.276 0.99
79_D 83_R 1.275 0.99
31_G 142_G 1.267 0.99
87_L 91_H 1.245 0.98
78_Q 82_E 1.22 0.98
18_G 21_A 1.208 0.98
72_R 78_Q 1.171 0.98
59_L 107_V 1.17 0.97
22_E 76_K 1.164 0.97
110_P 127_N 1.159 0.97
136_L 140_T 1.153 0.97
34_A 44_V 1.148 0.97
54_I 58_V 1.147 0.97
52_G 131_A 1.146 0.97
46_L 132_F 1.144 0.97
88_I 113_I 1.133 0.97
32_V 149_I 1.132 0.97
43_L 46_L 1.128 0.97
15_L 48_V 1.125 0.97
121_K 125_P 1.118 0.96
65_R 69_K 1.115 0.96
2_D 22_E 1.107 0.96
61_L 65_R 1.107 0.96
95_F 109_G 1.103 0.96
97_I 133_A 1.097 0.96
16_V 51_G 1.094 0.96
23_G 112_L 1.093 0.96
84_A 116_S 1.089 0.96
155_N 158_Q 1.087 0.96
29_L 149_I 1.085 0.96
56_D 100_R 1.076 0.95
49_A 53_M 1.067 0.95
120_P 124_L 1.065 0.95
19_S 22_E 1.063 0.95
12_Y 43_L 1.061 0.95
53_M 127_N 1.057 0.95
23_G 100_R 1.042 0.94
85_Q 116_S 1.041 0.94
56_D 127_N 1.04 0.94
5_T 8_S 1.034 0.94
140_T 144_A 1.029 0.94
44_V 139_T 1.025 0.93
16_V 47_S 1.02 0.93
61_L 120_P 1.017 0.93
86_K 125_P 1.009 0.93
7_I 33_A 1.008 0.93
27_T 48_V 1.002 0.92
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Scaled Score = (raw_score/average(raw_scores)) > 1 are listed. For all 3L/2 predictions, click on one of the links below.
HHsearch Results:
PDB Chains Cov P(%) HHΔ   Acc
2l2tA20.208310.40.946Contact Map0
4gxbB10.09387.20.95Contact Map
2ks1B10.21356.50.951Contact Map
2jwaA20.21356.20.951Contact Map0
2kncA10.28125.70.952Contact Map0.249
2jlnA10.91154.20.955Contact Map0.253
1fftB20.39584.10.955Contact Map1
2lbgA10.14063.70.956Contact Map0.017
4fc4A100.41673.30.957Contact Map0.41
2rddB10.16153.30.957Contact Map
Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.
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