May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org
YDEJ - Protein YdeJ
UniProt: P31131 Sequence
 Download Alignment
We filter this alignment to remove sites that have > 75% gaps before running GREMLIN.
EcoGene: EG11645
Length: 172 (156)
Sequences: 1977
Seq/Len: 12.67
YDEJ
Paralog alert: 0.20 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: PNCC YDEJ
GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Scaled Score Prob
94_A 114_T 3.448 1.00
46_L 113_I 2.859 1.00
25_S 59_F 2.842 1.00
82_S 96_E 2.782 1.00
33_L 109_V 2.732 1.00
79_S 96_E 2.55 1.00
82_S 93_V 2.473 1.00
80_Q 84_E 2.296 1.00
29_I 58_K 2.242 1.00
91_E 95_A 2.235 1.00
132_W 145_V 2.215 1.00
73_M 80_Q 2.14 1.00
36_T 107_A 2.044 1.00
43_G 51_C 1.952 1.00
33_L 108_D 1.883 1.00
49_A 160_V 1.859 1.00
86_Y 92_K 1.769 1.00
45_K 160_V 1.744 1.00
132_W 143_T 1.742 1.00
95_A 143_T 1.741 1.00
48_S 52_A 1.734 1.00
151_D 154_T 1.715 1.00
122_G 125_G 1.67 1.00
47_A 65_V 1.668 1.00
83_L 88_A 1.648 1.00
62_A 74_K 1.63 1.00
165_A 169_Q 1.63 1.00
135_W 166_Q 1.619 1.00
99_T 141_N 1.607 1.00
102_I 136_H 1.594 1.00
62_A 105_A 1.58 1.00
62_A 71_A 1.503 1.00
66_T 97_M 1.48 1.00
75_I 104_R 1.478 1.00
38_A 101_A 1.438 1.00
27_R 168_L 1.434 1.00
69_D 88_A 1.434 1.00
98_A 136_H 1.41 1.00
47_A 60_Y 1.409 1.00
113_I 159_A 1.408 1.00
66_T 71_A 1.4 0.99
79_S 82_S 1.391 0.99
112_A 134_A 1.389 0.99
91_E 132_W 1.389 0.99
101_A 110_S 1.385 0.99
133_F 146_M 1.354 0.99
38_A 76_L 1.348 0.99
130_T 145_V 1.344 0.99
25_S 53_A 1.338 0.99
48_S 156_L 1.316 0.99
52_A 156_L 1.313 0.99
116_Y 126_T 1.313 0.99
35_L 50_L 1.304 0.99
54_E 120_E 1.284 0.99
45_K 48_S 1.266 0.99
35_L 167_L 1.249 0.99
45_K 156_L 1.242 0.98
95_A 99_T 1.239 0.98
50_L 60_Y 1.196 0.98
64_F 105_A 1.185 0.98
37_T 60_Y 1.178 0.98
71_A 105_A 1.178 0.98
37_T 63_G 1.166 0.97
37_T 46_L 1.165 0.97
74_K 106_D 1.164 0.97
51_C 56_T 1.154 0.97
165_A 168_L 1.141 0.97
34_R 61_G 1.14 0.97
146_M 162_F 1.117 0.96
81_Q 85_R 1.11 0.96
78_V 100_G 1.101 0.96
36_T 105_A 1.101 0.96
21_T 49_A 1.094 0.96
61_G 107_A 1.086 0.96
91_E 145_V 1.072 0.95
109_V 137_I 1.065 0.95
36_T 101_A 1.065 0.95
28_L 33_L 1.064 0.95
26_Q 30_A 1.062 0.95
108_D 138_K 1.061 0.95
55_D 152_C 1.057 0.95
64_F 101_A 1.048 0.94
48_S 160_V 1.046 0.94
73_M 83_L 1.044 0.94
46_L 163_A 1.019 0.93
25_S 50_L 1.016 0.93
62_A 75_I 1.005 0.93
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Scaled Score = (raw_score/average(raw_scores)) > 1 are listed. For all 3L/2 predictions, click on one of the links below.
HHsearch Results: GREMLIN results overlayed on top 10 PDB hits:
Legend: Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on 10 HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov P(%) HHΔ   Acc
2a9sA20.94771000.142Contact Map0.845
3brcA20.773322.80.944Contact Map0.146
1ixrA20.93619.90.946Contact Map0.137
2ltlA10.52918.60.954Contact Map0.121
2ztdA20.94777.90.955Contact Map0.139
2a1jA10.36057.30.955Contact Map0.207
1u9lA20.37795.90.957Contact Map0.241
1fm0E10.67444.90.959Contact Map0.024
1cukA10.93024.90.959Contact Map0.144
2ozlB20.53494.80.959Contact Map0.208
Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.
Page generated in 2.0973 seconds.