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OPENSEQ.org

ACRD - Probable aminoglycoside efflux pump
UniProt: P24177 Sequence
Download Alignment
We filter this alignment to remove sites that have > 75% gaps before running GREMLIN.
EcoGene: EG10014
Length: 1037 (1018)
Sequences: 7824
Seq/Len: 7.69

ACRD
Paralog alert: 0.74 [within 20: 0.28] - ratio of genomes with paralogs
Cluster includes: ACRB ACRD ACRF CUSA MDTB MDTC MDTF
GREMLIN Results:
  • No predictions exist for P24177
HHsearch Results: GREMLIN results overlayed on top 10 PDB hits:
Legend: Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on 10 HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov P(%) HHΔ   Acc
4k0jA60.96821000.226Contact Map
4dx5A30.99711000.276Contact Map
3w9iA60.9991000.276Contact Map
3ne5A10.9721000.297Contact Map
3aqpA20.69241000.751Contact Map
2ew9A10.142772.20.983Contact Map
2ropA10.168847.20.986Contact Map
3cq1A10.094540.20.986Contact Map
1uwdA10.093531.30.987Contact Map
1p6tA10.145631.20.987Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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