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OPENSEQ.org

ARPA - Ankyrin repeat protein A
UniProt: P23325 Sequence
Download Alignment
We filter this alignment to remove sites that have > 75% gaps before running GREMLIN.
EcoGene: EG11208
Length: 728 (728)
Sequences: 2
Seq/Len: 0.00

ARPA
Paralog alert: 0.61 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: ARPA ARPB
GREMLIN Results:
  • No predictions exist for P23325
  • Not enough sequences to perform GREMLIN analysis on (0.00 < 1)
HHsearch Results: GREMLIN results overlayed on top 10 PDB hits:
Legend: Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on 10 HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov P(%) HHΔ   Acc
1k1aA10.33199.30.964Contact Map
3ljnA10.414899.30.965Contact Map
2fo1E10.490499.20.966Contact Map
2rfaA10.318799.20.966Contact Map
1n11A10.472599.20.966Contact Map
2ajaA20.471299.20.966Contact Map
2f8yA20.306399.10.967Contact Map
1yyhA20.329799.10.967Contact Map
1oy3D10.340799.10.968Contact Map
1s70B10.377799.10.968Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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