| UniProt: | P0AFQ5 | Sequence |
Download Alignment We filter this alignment to remove sites that have > 75% gaps before running GREMLIN. |
| EcoGene: | EG13857 | ||
| Length: | 128 (126) | ||
| Sequences: | 4501 | ||
| Seq/Len: | 35.72 |
| RUTC
Paralog alert: 0.59 [within 20: 0.10] - ratio of genomes with paralogs Cluster includes: RIDA RUTC TDCF YJGH YOAB |
Legend: The darker and larger the blue dots, the higher coevolution strength.
Residue pairs sorted by coevolution strength:
| i | j | Scaled Score | Prob | |
| 53_R | 95_E | 3.455 | 1.00 | |
| 60_R | 70_M | 2.843 | 1.00 | |
| 75_F | 121_A | 2.715 | 1.00 | |
| 47_D | 50_A | 2.644 | 1.00 | |
| 49_K | 91_E | 2.593 | 1.00 | |
| 49_K | 88_A | 2.384 | 1.00 | |
| 68_G | 72_D | 2.381 | 1.00 | |
| 68_G | 126_I | 2.298 | 1.00 | |
| 60_R | 64_E | 2.188 | 1.00 | |
| 53_R | 57_E | 2.163 | 1.00 | |
| 63_I | 124_A | 2.126 | 1.00 | |
| 108_Q | 111_L | 2.12 | 1.00 | |
| 79_F | 107_I | 2.031 | 1.00 | |
| 51_Q | 117_L | 1.958 | 1.00 | |
| 23_L | 126_I | 1.95 | 1.00 | |
| 78_I | 89_I | 1.909 | 1.00 | |
| 57_E | 96_F | 1.896 | 1.00 | |
| 34_L | 116_A | 1.876 | 1.00 | |
| 76_N | 122_T | 1.775 | 1.00 | |
| 24_A | 74_T | 1.725 | 1.00 | |
| 59_I | 122_T | 1.722 | 1.00 | |
| 28_V | 68_G | 1.718 | 1.00 | |
| 54_H | 58_T | 1.711 | 1.00 | |
| 37_D | 40_N | 1.648 | 1.00 | |
| 4_S | 23_L | 1.636 | 1.00 | |
| 85_N | 117_L | 1.604 | 1.00 | |
| 57_E | 60_R | 1.584 | 1.00 | |
| 24_A | 125_H | 1.57 | 1.00 | |
| 48_P | 52_T | 1.446 | 1.00 | |
| 53_R | 96_F | 1.397 | 0.99 | |
| 35_A | 116_A | 1.389 | 0.99 | |
| 28_V | 66_A | 1.386 | 0.99 | |
| 69_T | 72_D | 1.382 | 0.99 | |
| 80_I | 106_C | 1.347 | 0.99 | |
| 105_F | 121_A | 1.339 | 0.99 | |
| 35_A | 55_V | 1.337 | 0.99 | |
| 111_L | 115_D | 1.335 | 0.99 | |
| 54_H | 57_E | 1.334 | 0.99 | |
| 81_T | 85_N | 1.315 | 0.99 | |
| 27_V | 125_H | 1.309 | 0.99 | |
| 88_A | 91_E | 1.278 | 0.99 | |
| 83_W | 108_Q | 1.274 | 0.99 | |
| 43_L | 116_A | 1.263 | 0.99 | |
| 23_L | 26_G | 1.262 | 0.99 | |
| 29_Y | 123_I | 1.26 | 0.99 | |
| 73_V | 97_F | 1.23 | 0.98 | |
| 80_I | 89_I | 1.226 | 0.98 | |
| 90_N | 104_R | 1.197 | 0.98 | |
| 79_F | 105_F | 1.18 | 0.98 | |
| 85_N | 88_A | 1.176 | 0.98 | |
| 73_V | 122_T | 1.162 | 0.97 | |
| 49_K | 92_I | 1.122 | 0.97 | |
| 70_M | 73_V | 1.118 | 0.96 | |
| 92_I | 95_E | 1.115 | 0.96 | |
| 45_A | 50_A | 1.109 | 0.96 | |
| 63_I | 68_G | 1.108 | 0.96 | |
| 93_Y | 104_R | 1.104 | 0.96 | |
| 8_P | 20_P | 1.101 | 0.96 | |
| 77_S | 121_A | 1.099 | 0.96 | |
| 30_V | 62_V | 1.086 | 0.96 | |
| 23_L | 28_V | 1.069 | 0.95 | |
| 37_D | 44_F | 1.065 | 0.95 | |
| 49_K | 53_R | 1.058 | 0.95 | |
| 52_T | 89_I | 1.052 | 0.95 | |
| 64_E | 69_T | 1.048 | 0.94 | |
| 21_G | 62_V | 1.041 | 0.94 | |
| 56_L | 96_F | 1.034 | 0.94 | |
| 60_R | 96_F | 1.012 | 0.93 | |
| 81_T | 117_L | 1.011 | 0.93 | |
| 42_V | 114_P | 1.002 | 0.92 |
- Text file of predictions (all 3L/2 predictions)
- Generate restraints for ROSETTA Structure Modeling
Legend: Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on 10 HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
| PDB | Chains | Cov | P(%) | HHΔ | Acc | |
| 3v4dA | 6 | 1 | 100 | 0.066 | Contact Map | 0.892 |
| 1xrgA | 3 | 0.9844 | 100 | 0.073 | Contact Map | 0.874 |
| 1qahA | 2 | 1 | 100 | 0.077 | Contact Map | 0.663 |
| 3r0pA | 6 | 0.9844 | 100 | 0.081 | Contact Map | 0.863 |
| 3k0tA | 3 | 0.9844 | 100 | 0.082 | Contact Map | 0.835 |
| 3m1xA | 1 | 0.9844 | 100 | 0.086 | Contact Map | 0.657 |
| 3quwA | 1 | 0.9922 | 100 | 0.087 | Contact Map | 0.715 |
| 2dyyA | 12 | 0.9844 | 100 | 0.088 | Contact Map | 0.961 |
| 1jd1A | 6 | 0.9922 | 100 | 0.096 | Contact Map | 0.877 |
| 3vczA | 3 | 0.9766 | 100 | 0.097 | Contact Map | 0.896 |
Sequence Conservation (Image Generated using WebLogo v3)