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OPENSEQ.org

YQIB - Uncharacterized protein YqiB
UniProt: P0ADU7 Sequence
Download Alignment
We filter this alignment to remove sites that have > 75% gaps before running GREMLIN.
EcoGene: EG12185
Length: 140 (140)
Sequences: 170
Seq/Len: 1.21

YQIB
Paralog alert: 0.00 [within 20: 0.00] - ratio of genomes with paralogs
GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Scaled Score Prob
53_T 58_L 2.227 0.99
102_Y 105_P 2.181 0.98
12_M 86_V 2.023 0.97
113_D 117_Q 1.84 0.94
57_T 82_H 1.625 0.88
135_M 139_V 1.615 0.87
51_E 79_R 1.591 0.86
104_Y 114_E 1.55 0.84
16_E 129_C 1.51 0.82
81_Y 105_P 1.47 0.80
8_F 19_F 1.47 0.80
63_Q 86_V 1.464 0.79
25_L 125_W 1.462 0.79
7_D 22_L 1.459 0.79
40_V 43_A 1.455 0.79
102_Y 106_N 1.445 0.78
74_P 84_A 1.434 0.77
114_E 117_Q 1.41 0.76
86_V 124_D 1.409 0.76
30_D 54_R 1.403 0.75
20_S 100_A 1.363 0.72
136_A 140_Y 1.294 0.66
8_F 109_L 1.286 0.66
11_M 19_F 1.284 0.65
2_K 59_V 1.277 0.65
62_E 77_T 1.277 0.65
135_M 138_P 1.276 0.65
106_N 109_L 1.219 0.60
50_V 60_T 1.217 0.59
63_Q 125_W 1.208 0.58
45_Y 74_P 1.202 0.58
113_D 124_D 1.199 0.58
55_Y 60_T 1.198 0.58
106_N 114_E 1.194 0.57
8_F 12_M 1.191 0.57
137_I 140_Y 1.188 0.57
51_E 89_V 1.186 0.56
2_K 69_S 1.168 0.55
136_A 139_V 1.159 0.54
104_Y 109_L 1.155 0.53
16_E 57_T 1.155 0.53
50_V 58_L 1.154 0.53
19_F 32_P 1.15 0.53
33_G 59_V 1.139 0.52
12_M 84_A 1.138 0.52
39_Q 131_A 1.137 0.52
15_C 115_K 1.137 0.52
6_P 49_I 1.134 0.51
105_P 109_L 1.131 0.51
1_M 96_F 1.128 0.51
95_I 110_H 1.125 0.50
23_R 27_P 1.122 0.50
48_T 80_L 1.121 0.50
91_S 103_D 1.116 0.50
112_R 123_A 1.114 0.49
74_P 134_A 1.11 0.49
22_L 25_L 1.109 0.49
2_K 47_L 1.104 0.48
63_Q 121_F 1.093 0.47
55_Y 84_A 1.092 0.47
82_H 89_V 1.089 0.47
79_R 98_F 1.088 0.47
1_M 59_V 1.068 0.45
114_E 124_D 1.059 0.44
100_A 118_I 1.058 0.44
79_R 103_D 1.056 0.44
11_M 85_M 1.053 0.43
21_Q 54_R 1.053 0.43
117_Q 133_G 1.044 0.43
16_E 130_L 1.032 0.41
116_H 120_Q 1.028 0.41
102_Y 114_E 1.023 0.41
41_A 79_R 1.012 0.40
45_Y 86_V 1.008 0.39
32_P 46_R 1.007 0.39
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Scaled Score = (raw_score/average(raw_scores)) > 1 are listed. For all 3L/2 predictions, click on one of the links below.
HHsearch Results:
PDB Chains Cov P(%) HHΔ   Acc
3id6A10.685760.956Contact Map0.101
1nycA20.34294.70.959Contact Map0.286
4by6A20.38573.90.96Contact Map0.251
2cfaA10.37143.10.962Contact Map0
1i5pA10.35712.90.963Contact Map0.157
3l0qA20.33572.80.963Contact Map0.289
2hmqA40.69292.60.963Contact Map0.136
3ewtE10.17142.60.964Contact Map1
3ll3A20.32862.60.964Contact Map0.273
3cqvA10.31432.50.964Contact Map0.282

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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