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OPENSEQ.org

YGDD - UPF0382 inner membrane protein YgdD
UniProt: P0ADR2 Sequence
Download Alignment
We filter this alignment to remove sites that have > 75% gaps before running GREMLIN.
EcoGene: EG11793
Length: 131 (122)
Sequences: 728
Seq/Len: 5.97

YGDD
Paralog alert: 0.02 [within 20: 0.00] - ratio of genomes with paralogs
GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Scaled Score Prob
15_F 110_L 4.92 1.00
41_Q 45_E 3.276 1.00
47_Q 88_Y 2.682 1.00
14_G 53_A 2.527 1.00
13_S 51_T 2.186 1.00
53_A 76_L 2.142 1.00
76_L 112_G 2.134 1.00
80_T 109_F 2.114 1.00
14_G 51_T 2.02 1.00
82_L 100_F 1.998 1.00
39_W 87_L 1.952 1.00
29_S 35_V 1.951 1.00
6_M 73_S 1.923 1.00
10_A 14_G 1.875 1.00
24_G 40_I 1.762 1.00
10_A 55_L 1.736 1.00
10_A 51_T 1.723 1.00
19_A 110_L 1.688 1.00
49_F 52_L 1.674 1.00
40_I 43_G 1.61 0.99
15_F 114_A 1.598 0.99
21_G 46_Y 1.566 0.99
75_F 108_S 1.533 0.99
17_F 48_A 1.528 0.99
18_V 22_A 1.523 0.99
8_I 117_L 1.484 0.99
86_S 102_T 1.468 0.99
35_V 38_G 1.395 0.98
57_L 76_L 1.325 0.97
9_F 13_S 1.319 0.97
11_A 116_M 1.312 0.97
32_M 37_M 1.289 0.97
114_A 118_V 1.287 0.97
44_L 47_Q 1.265 0.96
39_W 90_L 1.241 0.95
75_F 111_A 1.228 0.95
104_V 108_S 1.219 0.95
8_I 121_I 1.214 0.95
50_H 109_F 1.209 0.95
25_A 42_T 1.184 0.94
100_F 104_V 1.168 0.93
32_M 91_A 1.164 0.93
90_L 99_A 1.157 0.93
23_F 86_S 1.156 0.93
97_L 100_F 1.123 0.91
75_F 112_G 1.117 0.91
90_L 102_T 1.11 0.91
36_E 39_W 1.097 0.90
24_G 47_Q 1.097 0.90
87_L 100_F 1.085 0.89
45_E 49_F 1.067 0.88
68_W 115_L 1.059 0.88
72_S 112_G 1.048 0.87
28_L 92_L 1.037 0.86
13_S 77_A 1.03 0.86
53_A 112_G 1.022 0.85
24_G 27_V 1.001 0.83
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Scaled Score = (raw_score/average(raw_scores)) > 1 are listed. For all 3L/2 predictions, click on one of the links below.
HHsearch Results:
PDB Chains Cov P(%) HHΔ   Acc
3mk7A40.969514.60.924Contact Map0.209
3ayfA10.992412.90.926Contact Map0.463
2gsmA20.984712.80.926Contact Map0.4
2yevA20.984710.90.928Contact Map0.491
3s8fA10.97719.90.929Contact Map0.488
1v54A20.94668.70.931Contact Map0.459
1fftA20.94665.30.937Contact Map0.335
3o0rB10.95421.30.955Contact Map0.462
2kluA10.27480.80.96Contact Map0
1zzaA10.35110.80.961Contact Map0.11

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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