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OPENSEQ.org
YPEB - Uncharacterized protein YpeB
UniProt: P0AD40 Sequence
 Download Alignment
We filter this alignment to remove sites that have > 75% gaps before running GREMLIN.
EcoGene: EG14366
Length: 72 (70)
Sequences: 270
Seq/Len: 3.86
YPEB
Paralog alert: 0.00 [within 20: 0.00] - ratio of genomes with paralogs
GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Scaled Score Prob
8_E 45_K 3.947 1.00
8_E 12_T 2.429 1.00
19_Y 22_R 2.171 1.00
33_L 54_L 2.089 1.00
54_L 58_T 2.064 1.00
26_D 69_K 2.045 1.00
16_F 35_F 2.044 1.00
29_E 33_L 2.043 1.00
24_L 46_L 1.741 0.99
25_I 65_V 1.73 0.99
9_I 53_T 1.665 0.99
12_T 49_L 1.527 0.98
50_M 59_E 1.51 0.98
55_L 59_E 1.509 0.97
56_I 62_T 1.456 0.97
19_Y 30_E 1.37 0.95
3_K 7_I 1.244 0.90
9_I 12_T 1.222 0.89
5_Q 48_E 1.203 0.88
29_E 57_K 1.176 0.87
4_E 8_E 1.155 0.86
2_E 5_Q 1.127 0.84
40_E 50_M 1.07 0.79
1_M 11_N 1.044 0.77
27_L 35_F 1.04 0.76
29_E 58_T 1.033 0.76
11_N 68_L 1.024 0.75
13_I 62_T 1.022 0.74
35_F 49_L 1.016 0.74
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Scaled Score = (raw_score/average(raw_scores)) > 1 are listed. For all 3L/2 predictions, click on one of the links below.
HHsearch Results:
PDB Chains Cov P(%) HHΔ   Acc
2yjgA20.8611200.912Contact Map0
1m5sA40.9306140.918Contact Map0.034
1m5hA80.930613.90.918Contact Map0.034
4bg7A20.9028120.92Contact Map0.019
1ftrA40.87590.924Contact Map0.053
3kdwA10.583390.924Contact Map0.368
2o3jA30.94445.80.931Contact Map0.202
1z21A10.93065.60.931Contact Map0.122
2p9xA40.755.50.931Contact Map0.361
3l4qC20.55.10.932Contact Map0.157
Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.
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