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OPENSEQ.org
DEDA - Protein DedA
UniProt: P0ABP6 Sequence
 Download Alignment
We filter this alignment to remove sites that have > 75% gaps before running GREMLIN.
EcoGene: EG10216
Length: 219 (211)
Sequences: 1807
Seq/Len: 8.56
DEDA
Paralog alert: 0.54 [within 20: 0.02] - ratio of genomes with paralogs
Cluster includes: DEDA YABI YGHB YOHD YQJA
GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Scaled Score Prob
124_H 127_K 2.988 1.00
70_N 73_M 2.922 1.00
110_R 113_Y 2.528 1.00
98_E 118_H 2.501 1.00
87_A 153_Y 2.449 1.00
79_L 165_L 2.42 1.00
130_I 162_I 2.396 1.00
118_H 122_E 2.394 1.00
78_M 168_V 2.372 1.00
38_F 88_V 2.268 1.00
55_L 172_T 2.09 1.00
34_F 80_I 1.966 1.00
83_I 161_V 1.915 1.00
62_A 176_Y 1.757 1.00
75_V 169_L 1.677 1.00
63_S 180_T 1.669 1.00
38_F 84_V 1.649 1.00
208_I 212_R 1.648 1.00
112_S 116_K 1.642 1.00
37_L 81_A 1.583 1.00
71_V 75_V 1.543 1.00
152_S 155_H 1.52 1.00
87_A 157_A 1.508 1.00
40_E 51_G 1.5 1.00
58_A 74_M 1.491 1.00
132_A 142_A 1.487 1.00
77_L 81_A 1.482 1.00
126_G 155_H 1.481 1.00
74_M 172_T 1.447 0.99
71_V 172_T 1.434 0.99
115_D 119_Q 1.426 0.99
102_S 111_R 1.397 0.99
106_S 109_F 1.397 0.99
127_K 131_L 1.396 0.99
157_A 161_V 1.384 0.99
121_Y 146_A 1.369 0.99
185_Q 189_K 1.368 0.99
143_P 160_N 1.368 0.99
25_Y 32_I 1.366 0.99
63_S 176_Y 1.365 0.99
195_I 199_S 1.355 0.99
193_V 197_V 1.348 0.99
55_L 59_G 1.34 0.99
89_N 140_T 1.322 0.99
94_R 150_H 1.314 0.99
199_S 202_P 1.297 0.98
82_A 164_A 1.292 0.98
83_I 164_A 1.287 0.98
117_T 149_G 1.276 0.98
160_N 164_A 1.275 0.98
20_E 24_E 1.257 0.98
135_V 138_V 1.256 0.98
91_T 95_L 1.252 0.98
200_I 203_G 1.251 0.98
204_V 208_I 1.234 0.98
71_V 173_Y 1.234 0.98
40_E 133_R 1.233 0.98
75_V 173_Y 1.233 0.98
206_E 209_R 1.228 0.98
111_R 115_D 1.223 0.98
86_D 153_Y 1.215 0.97
79_L 83_I 1.192 0.97
153_Y 157_A 1.19 0.97
75_V 172_T 1.185 0.97
76_V 80_I 1.172 0.97
72_H 173_Y 1.165 0.96
173_Y 177_F 1.164 0.96
7_L 11_I 1.16 0.96
87_A 160_N 1.149 0.96
30_Y 73_M 1.14 0.96
101_F 109_F 1.131 0.96
207_I 211_K 1.126 0.95
128_T 142_A 1.124 0.95
44_V 47_P 1.124 0.95
83_I 160_N 1.116 0.95
128_T 151_M 1.108 0.95
101_F 106_S 1.089 0.94
33_L 78_M 1.085 0.94
39_C 43_L 1.084 0.94
89_N 144_F 1.076 0.94
73_M 77_L 1.073 0.94
183_M 187_N 1.064 0.93
17_H 20_E 1.062 0.93
208_I 211_K 1.061 0.93
197_V 201_L 1.061 0.93
130_I 166_L 1.057 0.93
62_A 71_V 1.051 0.93
37_L 55_L 1.051 0.93
73_M 76_V 1.049 0.93
86_D 171_F 1.047 0.93
95_L 99_K 1.041 0.92
194_G 198_V 1.039 0.92
129_I 132_A 1.036 0.92
57_V 60_A 1.034 0.92
34_F 81_A 1.031 0.92
84_V 88_V 1.029 0.92
57_V 188_L 1.028 0.92
30_Y 69_L 1.024 0.91
156_F 160_N 1.023 0.91
121_Y 142_A 1.018 0.91
39_C 46_T 1.017 0.91
42_G 140_T 1.011 0.91
118_H 149_G 1.007 0.91
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Scaled Score = (raw_score/average(raw_scores)) > 1 are listed. For all 3L/2 predictions, click on one of the links below.
HHsearch Results:
PDB Chains Cov P(%) HHΔ   Acc
2kluA10.187223.10.942Contact Map0.308
2jwaA20.182619.90.944Contact Map0.681
2l2tA20.1781170.945Contact Map0.613
2ks1B10.182612.60.949Contact Map0.392
2kv5A10.150711.20.95Contact Map0.463
2m20A20.15079.10.952Contact Map0.606
4b19A10.1377.70.953Contact Map0.499
2lbgA10.12334.80.958Contact Map0.02
2h3oA10.27854.70.958Contact Map0.066
1fftB20.31514.60.958Contact Map0.5
Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.
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