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OPENSEQ.org
CYDB - Cytochrome d ubiquinol oxidase subunit 2
UniProt: P0ABK2 Sequence
 Download Alignment
We filter this alignment to remove sites that have > 75% gaps before running GREMLIN.
EcoGene: EG10174
Length: 379 (365)
Sequences: 1322
Seq/Len: 3.62
CYDB
Paralog alert: 0.48 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: APPB CYDB
GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Scaled Score Prob
166_N 169_G 3.147 1.00
34_M 181_I 2.804 1.00
344_A 348_V 2.749 1.00
268_I 308_I 2.739 1.00
86_F 145_V 2.333 1.00
320_M 323_A 2.333 1.00
48_I 366_I 2.239 1.00
128_F 177_V 2.203 1.00
170_L 174_V 2.2 1.00
360_W 363_F 2.158 1.00
45_E 199_R 2.122 1.00
275_L 297_L 2.105 1.00
131_P 176_S 2.098 1.00
185_A 204_A 2.036 1.00
334_Q 338_N 2.008 1.00
74_A 340_M 1.971 1.00
58_D 105_D 1.953 1.00
313_F 326_T 1.951 1.00
19_L 71_L 1.946 1.00
204_A 283_A 1.89 1.00
34_M 177_V 1.88 1.00
131_P 180_I 1.877 1.00
178_G 214_C 1.849 1.00
342_W 346_V 1.834 0.99
17_V 21_G 1.83 0.99
132_L 173_G 1.825 0.99
47_R 51_N 1.823 0.99
186_T 204_A 1.82 0.99
174_V 178_G 1.804 0.99
319_T 323_A 1.787 0.99
85_G 145_V 1.767 0.99
353_L 356_A 1.764 0.99
46_R 120_D 1.752 0.99
225_G 228_G 1.749 0.99
132_L 177_V 1.745 0.99
183_Q 296_S 1.738 0.99
24_V 296_S 1.731 0.99
50_I 104_F 1.688 0.99
33_G 127_S 1.674 0.99
228_G 231_V 1.674 0.99
276_P 298_T 1.666 0.99
139_G 172_A 1.639 0.99
193_V 367_T 1.626 0.98
226_I 229_Y 1.621 0.98
205_Q 284_R 1.616 0.98
8_R 331_T 1.608 0.98
136_V 173_G 1.596 0.98
227_D 230_V 1.585 0.98
8_R 337_L 1.577 0.98
158_T 319_T 1.571 0.98
268_I 271_L 1.555 0.98
142_L 310_M 1.555 0.98
92_L 133_V 1.532 0.97
133_V 165_L 1.514 0.97
86_F 140_N 1.505 0.97
202_A 206_V 1.503 0.97
143_Q 166_N 1.501 0.97
174_V 214_C 1.494 0.97
43_D 116_R 1.486 0.97
107_R 120_D 1.459 0.96
85_G 89_A 1.45 0.96
122_G 126_G 1.43 0.96
86_F 89_A 1.428 0.96
8_R 241_S 1.428 0.96
28_F 359_Y 1.427 0.96
13_L 17_V 1.427 0.96
273_V 277_L 1.427 0.96
134_I 180_I 1.419 0.95
216_A 273_V 1.413 0.95
341_T 365_R 1.376 0.94
81_A 315_M 1.375 0.94
28_F 56_H 1.369 0.94
40_G 49_M 1.367 0.94
93_V 134_I 1.364 0.94
132_L 136_V 1.359 0.94
104_F 119_W 1.357 0.94
181_I 207_A 1.347 0.94
179_M 302_I 1.325 0.93
341_T 345_V 1.325 0.93
140_N 164_L 1.324 0.93
121_W 125_I 1.319 0.93
90_M 137_A 1.315 0.92
18_L 21_G 1.31 0.92
108_S 116_R 1.297 0.92
234_T 238_Y 1.294 0.92
124_F 128_F 1.293 0.92
14_L 344_A 1.292 0.92
226_I 231_V 1.29 0.92
126_G 130_P 1.273 0.91
227_D 231_V 1.272 0.91
347_L 350_I 1.272 0.91
313_F 321_M 1.265 0.90
49_M 188_L 1.264 0.90
96_S 126_G 1.261 0.90
271_L 301_C 1.258 0.90
32_V 49_M 1.256 0.90
268_I 301_C 1.252 0.90
28_F 191_R 1.248 0.90
18_L 66_T 1.244 0.89
140_N 169_G 1.241 0.89
212_L 273_V 1.238 0.89
274_V 278_L 1.23 0.89
11_W 340_M 1.218 0.88
201_R 205_Q 1.216 0.88
47_R 50_I 1.208 0.88
133_V 136_V 1.187 0.86
125_I 129_V 1.186 0.86
145_V 315_M 1.186 0.86
48_I 51_N 1.186 0.86
150_D 158_T 1.185 0.86
28_F 292_F 1.182 0.86
300_A 304_L 1.18 0.86
30_M 131_P 1.176 0.86
70_A 73_A 1.176 0.86
128_F 132_L 1.173 0.85
225_G 230_V 1.171 0.85
356_A 360_W 1.169 0.85
226_I 230_V 1.169 0.85
117_N 121_W 1.167 0.85
10_I 341_T 1.166 0.85
101_P 104_F 1.159 0.84
164_L 167_P 1.154 0.84
96_S 129_V 1.151 0.84
225_G 229_Y 1.151 0.84
247_E 250_R 1.15 0.84
230_V 234_T 1.141 0.83
34_M 127_S 1.127 0.82
20_I 303_I 1.117 0.81
10_I 14_L 1.116 0.81
35_L 185_A 1.116 0.81
128_F 181_I 1.115 0.81
48_I 196_L 1.114 0.81
197_H 288_A 1.111 0.81
17_V 69_G 1.105 0.80
43_D 108_S 1.101 0.80
215_F 305_T 1.1 0.80
168_F 242_N 1.098 0.80
78_V 314_V 1.096 0.80
203_T 206_V 1.093 0.79
114_R 118_M 1.088 0.79
277_L 281_L 1.087 0.79
98_F 331_T 1.087 0.79
89_A 164_L 1.087 0.79
99_F 122_G 1.084 0.79
138_F 306_A 1.082 0.78
169_G 172_A 1.08 0.78
68_G 79_Y 1.078 0.78
11_W 74_A 1.076 0.78
275_L 301_C 1.074 0.78
116_R 120_D 1.071 0.77
15_V 70_A 1.068 0.77
148_N 158_T 1.067 0.77
189_Q 283_A 1.066 0.77
208_A 279_T 1.066 0.77
208_A 280_I 1.065 0.77
78_V 82_A 1.062 0.77
89_A 136_V 1.062 0.77
178_G 207_A 1.061 0.76
121_W 124_F 1.058 0.76
69_G 348_V 1.058 0.76
132_L 170_L 1.057 0.76
160_N 163_Q 1.057 0.76
317_S 323_A 1.056 0.76
179_M 299_L 1.054 0.76
20_I 300_A 1.054 0.76
15_V 78_V 1.05 0.75
366_I 369_E 1.049 0.75
348_V 352_L 1.044 0.75
278_L 294_F 1.043 0.75
290_W 294_F 1.042 0.75
224_Y 230_V 1.04 0.74
23_A 355_T 1.035 0.74
73_A 84_S 1.033 0.74
216_A 220_V 1.033 0.74
317_S 320_M 1.033 0.74
237_H 240_A 1.025 0.73
136_V 170_L 1.024 0.73
37_R 124_F 1.022 0.73
118_M 121_W 1.02 0.72
224_Y 227_D 1.012 0.72
86_F 315_M 1.004 0.71
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Scaled Score = (raw_score/average(raw_scores)) > 1 are listed. For all 3L/2 predictions, click on one of the links below.
HHsearch Results:
PDB Chains Cov P(%) HHΔ   Acc
2l8sA10.13724.50.981Contact Map0.418
3hb3B10.25074.20.981Contact Map0.472
1fftB20.22163.10.982Contact Map0.164
4f4lA40.11613.10.982Contact Map0.378
4gb7A10.20322.70.983Contact Map0.192
2gsmB20.18472.30.983Contact Map0.457
2y69G20.17942.10.984Contact Map0.454
1zzaA10.14512.10.984Contact Map0.393
3q48A20.24542.10.984Contact Map0.261
2kncA10.13982.10.984Contact Map0.613
Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.
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