OPENSEQ.org - ATPZ - ECOLI GREMLIN

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ATPZ - ATP synthase protein I

UniProt:	P0ABC0	Sequence MSVSLVSRNVARKLLLVQLLVVIASGLLFSLKDPFWGVSAISGGLAVFLPNVLFMIFAWRHQAHTPAKGRVAWTFAFGEAFKVLAMLVLLVVALAVLKAVFLPLIVTWVLVLVVQILAPAVINNKG	Download Alignment We filter this alignment to remove sites that have > 75% gaps before running GREMLIN.
EcoGene:	EG10106
Length:	126 (121)
Sequences:	170
Seq/Len:	1.40

ATPZ
Paralog alert: 0.01 [within 20: 0.00] - ratio of genomes with paralogs

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Scaled Score	Prob
59_W	64_H	2.069	0.98
46_A	93_A	1.907	0.97
59_W	63_A	1.694	0.92
76_A	115_Q	1.666	0.92
108_W	112_L	1.664	0.92
63_A	74_T	1.505	0.85
93_A	109_V	1.489	0.84
46_A	121_V	1.475	0.83
50_P	85_A	1.432	0.81
58_A	64_H	1.416	0.80
40_A	44_G	1.395	0.78
46_A	104_L	1.384	0.78
14_L	119_P	1.37	0.77
75_F	89_L	1.329	0.74
46_A	90_L	1.329	0.74
20_L	47_V	1.312	0.72
4_S	7_S	1.296	0.71
20_L	41_I	1.285	0.70
24_A	27_L	1.234	0.65
33_D	72_A	1.234	0.65
58_A	104_L	1.221	0.64
34_P	37_G	1.217	0.64
50_P	83_V	1.206	0.63
84_L	88_V	1.206	0.63
23_I	32_K	1.205	0.63
46_A	58_A	1.2	0.62
45_L	103_P	1.2	0.62
49_L	87_L	1.18	0.60
81_F	87_L	1.164	0.59
37_G	114_V	1.163	0.59
86_M	89_L	1.163	0.59
26_G	108_W	1.159	0.58
26_G	33_D	1.156	0.58
53_L	57_F	1.151	0.57
110_L	123_N	1.148	0.57
53_L	81_F	1.141	0.56
53_L	91_V	1.138	0.56
86_M	111_V	1.135	0.56
13_K	85_A	1.122	0.55
75_F	79_E	1.114	0.54
19_L	22_V	1.107	0.53
26_G	88_V	1.094	0.52
57_F	78_G	1.092	0.51
57_F	89_L	1.092	0.51
17_V	23_I	1.091	0.51
55_M	63_A	1.087	0.51
44_G	112_L	1.084	0.51
76_A	79_E	1.083	0.51
65_T	71_V	1.079	0.50
11_A	14_L	1.074	0.50
80_A	119_P	1.069	0.49
55_M	67_A	1.064	0.49
62_Q	67_A	1.053	0.48
88_V	108_W	1.04	0.46
62_Q	122_I	1.025	0.45
17_V	22_V	1.022	0.44
78_G	84_L	1.019	0.44
91_V	94_L	1.013	0.44
9_N	90_L	1.013	0.44
61_H	74_T	1.012	0.43

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Scaled Score = (raw_score/average(raw_scores)) > 1 are listed. For all 3L/2 predictions, click on one of the links below.

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling

HHsearch Results:

PDB	Chains	Cov	P(%)	HHΔ		Acc
4g1uA	2	0.5238	2.6	0.948	Contact Map	0.186
2qi9A	2	0.4921	2	0.951	Contact Map	0.438
2lx0A	1	0.254	1.7	0.953	Contact Map	0.382
2nq2A	2	0.5317	1.7	0.953	Contact Map	0.464
4b19A	1	0.2302	1.6	0.954	Contact Map	0
2xq2A	1	0.9921	1.4	0.956	Contact Map	0.073
3l1lA	1	0.8889	1.3	0.956	Contact Map	0.146
3j01B	1	0.3968	1.2	0.957	Contact Map	0.026
4lz6A	1	0.5476	1.1	0.958	Contact Map	0.286
3w4tA	1	0.5714	0.7	0.963	Contact Map	0.501

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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