| UniProt: | P0AAW1 | Sequence |
Download Alignment We filter this alignment to remove sites that have > 75% gaps before running GREMLIN. |
| EcoGene: | EG13672 | ||
| Length: | 253 (243) | ||
| Sequences: | 5780 | ||
| Seq/Len: | 23.79 |
| YBHP
Paralog alert: 0.76 [within 20: 0.03] - ratio of genomes with paralogs Cluster includes: EX3 YAFD YBHP |
Legend: The darker and larger the blue dots, the higher coevolution strength.
Residue pairs sorted by coevolution strength:
| i | j | Scaled Score | Prob | |
| 11_K | 250_E | 5.571 | 1.00 | |
| 46_C | 173_A | 4.699 | 1.00 | |
| 98_V | 125_C | 3.835 | 1.00 | |
| 228_S | 252_H | 3.453 | 1.00 | |
| 231_T | 248_S | 3.026 | 1.00 | |
| 106_H | 126_R | 2.806 | 1.00 | |
| 13_L | 248_S | 2.791 | 1.00 | |
| 46_C | 138_V | 2.767 | 1.00 | |
| 220_I | 249_A | 2.649 | 1.00 | |
| 47_L | 50_V | 2.647 | 1.00 | |
| 233_L | 248_S | 2.57 | 1.00 | |
| 46_C | 140_C | 2.503 | 1.00 | |
| 98_V | 140_C | 2.502 | 1.00 | |
| 43_D | 101_R | 2.501 | 1.00 | |
| 196_I | 222_V | 2.451 | 1.00 | |
| 105_E | 128_V | 2.343 | 1.00 | |
| 229_A | 250_E | 2.29 | 1.00 | |
| 14_T | 48_Q | 2.274 | 1.00 | |
| 14_T | 247_L | 2.246 | 1.00 | |
| 126_R | 137_H | 2.196 | 1.00 | |
| 13_L | 42_A | 2.017 | 1.00 | |
| 128_V | 135_A | 2.007 | 1.00 | |
| 194_D | 199_R | 1.927 | 1.00 | |
| 104_I | 127_I | 1.88 | 1.00 | |
| 44_I | 138_V | 1.872 | 1.00 | |
| 170_V | 193_L | 1.86 | 1.00 | |
| 80_D | 103_P | 1.824 | 1.00 | |
| 48_Q | 140_C | 1.818 | 1.00 | |
| 173_A | 220_I | 1.81 | 1.00 | |
| 222_V | 251_I | 1.769 | 1.00 | |
| 35_D | 39_T | 1.749 | 1.00 | |
| 36_A | 40_V | 1.745 | 1.00 | |
| 12_V | 171_L | 1.727 | 1.00 | |
| 100_S | 103_P | 1.715 | 1.00 | |
| 124_Y | 137_H | 1.684 | 1.00 | |
| 35_D | 38_R | 1.675 | 1.00 | |
| 226_S | 252_H | 1.648 | 1.00 | |
| 50_V | 97_A | 1.632 | 1.00 | |
| 126_R | 168_E | 1.577 | 1.00 | |
| 42_A | 45_V | 1.576 | 1.00 | |
| 220_I | 251_I | 1.571 | 1.00 | |
| 158_A | 162_N | 1.563 | 1.00 | |
| 143_L | 153_Q | 1.561 | 1.00 | |
| 11_K | 248_S | 1.522 | 1.00 | |
| 143_L | 154_L | 1.521 | 1.00 | |
| 189_V | 221_Y | 1.519 | 1.00 | |
| 13_L | 40_V | 1.493 | 1.00 | |
| 195_E | 216_R | 1.477 | 1.00 | |
| 137_H | 168_E | 1.473 | 1.00 | |
| 169_P | 225_A | 1.464 | 1.00 | |
| 152_A | 155_A | 1.452 | 1.00 | |
| 141_V | 176_F | 1.451 | 1.00 | |
| 152_A | 156_M | 1.451 | 1.00 | |
| 20_G | 52_G | 1.447 | 1.00 | |
| 9_S | 250_E | 1.428 | 1.00 | |
| 222_V | 227_A | 1.427 | 1.00 | |
| 162_N | 165_P | 1.423 | 1.00 | |
| 126_R | 135_A | 1.418 | 1.00 | |
| 228_S | 250_E | 1.417 | 1.00 | |
| 130_P | 134_K | 1.384 | 0.99 | |
| 165_P | 225_A | 1.38 | 0.99 | |
| 46_C | 98_V | 1.376 | 0.99 | |
| 32_E | 35_D | 1.35 | 0.99 | |
| 124_Y | 139_M | 1.347 | 0.99 | |
| 155_A | 159_E | 1.337 | 0.99 | |
| 170_V | 223_K | 1.315 | 0.99 | |
| 108_E | 124_Y | 1.313 | 0.99 | |
| 39_T | 235_L | 1.299 | 0.99 | |
| 172_V | 221_Y | 1.298 | 0.99 | |
| 154_L | 178_D | 1.291 | 0.99 | |
| 139_M | 161_V | 1.287 | 0.99 | |
| 122_V | 139_M | 1.276 | 0.99 | |
| 123_L | 140_C | 1.234 | 0.98 | |
| 130_P | 133_G | 1.234 | 0.98 | |
| 40_V | 233_L | 1.233 | 0.98 | |
| 102_Y | 127_I | 1.23 | 0.98 | |
| 196_I | 227_A | 1.227 | 0.98 | |
| 227_A | 249_A | 1.224 | 0.98 | |
| 41_S | 101_R | 1.173 | 0.98 | |
| 194_D | 224_N | 1.159 | 0.97 | |
| 44_I | 102_Y | 1.15 | 0.97 | |
| 15_I | 33_L | 1.143 | 0.97 | |
| 161_V | 193_L | 1.14 | 0.97 | |
| 141_V | 172_V | 1.137 | 0.97 | |
| 100_S | 104_I | 1.132 | 0.97 | |
| 31_P | 35_D | 1.13 | 0.97 | |
| 171_L | 222_V | 1.126 | 0.97 | |
| 124_Y | 160_W | 1.12 | 0.96 | |
| 138_V | 173_A | 1.11 | 0.96 | |
| 197_F | 205_A | 1.107 | 0.96 | |
| 47_L | 99_L | 1.106 | 0.96 | |
| 34_R | 38_R | 1.104 | 0.96 | |
| 44_I | 125_C | 1.095 | 0.96 | |
| 148_A | 152_A | 1.086 | 0.96 | |
| 13_L | 45_V | 1.086 | 0.96 | |
| 141_V | 157_L | 1.084 | 0.96 | |
| 102_Y | 130_P | 1.084 | 0.96 | |
| 200_A | 227_A | 1.069 | 0.95 | |
| 45_V | 99_L | 1.059 | 0.95 | |
| 37_V | 42_A | 1.056 | 0.95 | |
| 80_D | 102_Y | 1.054 | 0.95 | |
| 104_I | 107_Y | 1.041 | 0.94 | |
| 71_E | 74_A | 1.04 | 0.94 | |
| 137_H | 170_V | 1.038 | 0.94 | |
| 160_W | 163_E | 1.03 | 0.94 | |
| 17_I | 20_G | 1.03 | 0.94 | |
| 137_H | 164_L | 1.027 | 0.94 | |
| 49_E | 177_N | 1.026 | 0.94 | |
| 156_M | 159_E | 1.021 | 0.93 | |
| 230_P | 249_A | 1.017 | 0.93 | |
| 15_I | 246_P | 1.013 | 0.93 |
- Text file of predictions (all 3L/2 predictions)
- Generate restraints for ROSETTA Structure Modeling
Legend: Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on 10 HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
| PDB | Chains | Cov | P(%) | HHΔ | Acc | |
| 3mprA | 4 | 0.9289 | 100 | 0.283 | Contact Map | 0.787 |
| 3g6sA | 1 | 0.913 | 100 | 0.29 | Contact Map | 0.774 |
| 4b8cD | 4 | 0.9526 | 100 | 0.305 | Contact Map | 0.597 |
| 3l1wA | 6 | 0.8933 | 100 | 0.306 | Contact Map | 0.829 |
| 3tebA | 2 | 0.9407 | 100 | 0.32 | Contact Map | 0.793 |
| 2j63A | 2 | 0.9328 | 100 | 0.322 | Contact Map | 0.774 |
| 4gz1A | 2 | 0.9051 | 100 | 0.323 | Contact Map | 0.783 |
| 4k6lF | 1 | 0.913 | 100 | 0.326 | Contact Map | 0.619 |
| 3ngqA | 1 | 0.9565 | 100 | 0.332 | Contact Map | 0.76 |
| 4f1hA | 1 | 0.8814 | 100 | 0.332 | Contact Map | 0.805 |
Sequence Conservation (Image Generated using WebLogo v3)