May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org
YBAK - Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK
UniProt: P0AAR3 Sequence
 Download Alignment
We filter this alignment to remove sites that have > 75% gaps before running GREMLIN.
EcoGene: EG12454
Length: 159 (155)
Sequences: 2262
Seq/Len: 14.59
YBAK
Paralog alert: 0.50 [within 20: 0.01] - ratio of genomes with paralogs
Cluster includes: YBAK YEAK
GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Scaled Score Prob
125_T 138_E 3.279 1.00
9_E 15_F 2.744 1.00
143_D 146_K 2.676 1.00
58_H 113_P 2.609 1.00
92_A 103_I 2.595 1.00
51_A 91_V 2.566 1.00
74_K 154_D 2.522 1.00
79_L 115_I 2.492 1.00
140_A 143_D 2.418 1.00
145_A 152_F 2.334 1.00
78_A 153_A 2.325 1.00
71_D 157_R 2.135 1.00
118_A 154_D 2.11 1.00
62_A 75_V 2.072 1.00
16_Q 138_E 2.05 1.00
30_G 66_V 2.021 1.00
121_Q 152_F 2.006 1.00
7_L 11_N 1.951 1.00
118_A 122_E 1.939 1.00
18_H 138_E 1.806 1.00
88_D 91_V 1.798 1.00
59_L 95_S 1.777 1.00
127_Y 138_E 1.768 1.00
43_Q 123_F 1.764 1.00
11_N 147_I 1.74 1.00
52_V 81_A 1.713 1.00
60_A 75_V 1.658 1.00
31_D 35_K 1.637 1.00
6_K 10_K 1.566 1.00
71_D 74_K 1.544 1.00
62_A 155_I 1.515 1.00
130_G 136_D 1.502 1.00
124_A 140_A 1.481 1.00
14_S 143_D 1.45 1.00
68_G 156_A 1.433 1.00
91_V 95_S 1.397 0.99
6_K 9_E 1.362 0.99
40_N 43_Q 1.36 0.99
111_R 149_D 1.349 0.99
50_V 75_V 1.349 0.99
42_D 123_F 1.323 0.99
115_I 155_I 1.319 0.99
49_L 112_L 1.317 0.99
52_V 58_H 1.317 0.99
45_Y 120_A 1.314 0.99
89_P 100_V 1.311 0.99
118_A 121_Q 1.301 0.99
121_Q 142_G 1.282 0.99
45_Y 63_V 1.281 0.99
32_E 36_K 1.242 0.98
117_D 156_A 1.223 0.98
145_A 150_A 1.218 0.98
108_Q 114_T 1.21 0.98
42_D 67_A 1.203 0.98
7_L 10_K 1.203 0.98
25_A 32_E 1.198 0.98
64_T 155_I 1.184 0.98
50_V 60_A 1.148 0.97
50_V 70_L 1.14 0.97
113_P 151_K 1.135 0.97
120_A 152_F 1.129 0.97
142_G 145_A 1.124 0.97
81_A 84_V 1.122 0.97
59_L 87_A 1.12 0.96
128_V 139_L 1.117 0.96
73_K 77_K 1.11 0.96
39_L 127_Y 1.094 0.96
139_L 143_D 1.091 0.96
119_P 122_E 1.089 0.96
52_V 56_M 1.077 0.95
16_Q 125_T 1.076 0.95
93_Q 99_L 1.074 0.95
13_I 147_I 1.07 0.95
92_A 100_V 1.046 0.94
61_V 108_Q 1.041 0.94
128_V 144_L 1.036 0.94
105_P 144_L 1.027 0.94
5_V 9_E 1.014 0.93
91_V 94_R 1.008 0.93
142_G 146_K 1.001 0.92
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Scaled Score = (raw_score/average(raw_scores)) > 1 are listed. For all 3L/2 predictions, click on one of the links below.
HHsearch Results: GREMLIN results overlayed on top 10 PDB hits:
Legend: Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on 10 HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov P(%) HHΔ   Acc
1dbuA10.99371000.13Contact Map0.729
2dxaA111000.144Contact Map0.769
2z0xA10.94971000.165Contact Map0.687
1vjfA10.96231000.17Contact Map0.611
1wdvA20.94971000.171Contact Map0.771
1vkiA20.94971000.176Contact Map0.655
3op6A20.93081000.177Contact Map0.683
3memA10.86161000.33Contact Map0.523
2j3lA20.981197.80.794Contact Map0.727
2m46A10.496945.60.913Contact Map0.757
Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.
Page generated in 0.4102 seconds.