OPENSEQ.org - YKGJ - ECOLI GREMLIN

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YKGJ - Uncharacterized protein YkgJ

UniProt:	P0AAL9	Sequence MSNLNPCMTCGACCAFFRVSFYWAEADDAGGTIPARLTEQISPFHRCMSGTNQKNPRCIALAGTPGKNACCTIYKNRSSTCREFAMSGENGVVNEACNRARAKYGLTPL	Download Alignment We filter this alignment to remove sites that have > 75% gaps before running GREMLIN.
EcoGene:	EG14323
Length:	109 (109)
Sequences:	174
Seq/Len:	1.60

YKGJ
Paralog alert: 0.02 [within 20: 0.01] - ratio of genomes with paralogs

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Scaled Score	Prob
64_T	67_K	2.367	1.00
39_E	52_N	2.121	0.99
96_A	99_R	1.692	0.94
19_V	51_T	1.601	0.91
84_F	96_A	1.539	0.89
88_G	103_K	1.522	0.88
42_S	67_K	1.511	0.88
7_C	11_G	1.502	0.88
12_A	19_V	1.485	0.87
62_A	72_T	1.484	0.87
37_L	59_I	1.48	0.86
25_E	50_G	1.437	0.84
27_D	35_A	1.341	0.78
41_I	55_N	1.335	0.78
28_D	46_R	1.311	0.76
54_K	87_S	1.307	0.75
20_S	23_W	1.291	0.74
9_T	59_I	1.288	0.74
22_Y	47_C	1.285	0.74
87_S	98_N	1.281	0.73
28_D	35_A	1.278	0.73
63_G	66_G	1.276	0.73
17_F	33_I	1.256	0.71
18_R	50_G	1.233	0.69
18_R	21_F	1.225	0.69
63_G	69_A	1.222	0.68
65_P	98_N	1.215	0.68
10_C	13_C	1.179	0.64
10_C	14_C	1.179	0.64
21_F	50_G	1.161	0.63
62_A	70_C	1.151	0.62
22_Y	38_T	1.142	0.61
88_G	100_A	1.133	0.60
76_N	103_K	1.122	0.59
63_G	74_Y	1.111	0.57
11_G	14_C	1.109	0.57
35_A	46_R	1.107	0.57
21_F	51_T	1.1	0.56
104_Y	108_P	1.097	0.56
84_F	99_R	1.092	0.55
10_C	19_V	1.087	0.55
13_C	19_V	1.087	0.55
14_C	19_V	1.087	0.55
40_Q	43_P	1.084	0.55
22_Y	52_N	1.083	0.55
23_W	26_A	1.062	0.52
36_R	75_K	1.056	0.52
17_F	20_S	1.047	0.51
79_S	100_A	1.045	0.51
38_T	48_M	1.044	0.50
27_D	46_R	1.04	0.50
84_F	94_N	1.039	0.50
49_S	60_A	1.036	0.50
69_A	74_Y	1.033	0.49
32_T	75_K	1.031	0.49
33_I	37_L	1.028	0.49
7_C	10_C	1.026	0.49
7_C	13_C	1.026	0.49
7_C	14_C	1.026	0.49
28_D	89_E	1.025	0.48
89_E	92_V	1.013	0.47
28_D	88_G	1.012	0.47

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Scaled Score = (raw_score/average(raw_scores)) > 1 are listed. For all 3L/2 predictions, click on one of the links below.

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling

HHsearch Results:

PDB	Chains	Cov	P(%)	HHΔ		Acc
3plvC	1	0.1743	18.1	0.942	Contact Map	0.552
2bs2B	2	0.367	4.9	0.955	Contact Map	0.126
3ec1A	2	0.7156	2	0.963	Contact Map	0
1kf6B	2	0.422	1.9	0.964	Contact Map	0.022
2gmhA	2	0.3394	1.9	0.964	Contact Map	0.01
1zx6A	1	0.3578	1.8	0.964	Contact Map	0.211
3bqoB	1	0.0734	1.8	0.964	Contact Map	0
2p0vA	2	0.5229	1.7	0.965	Contact Map	0.031
2lcqA	1	0.3119	1.7	0.965	Contact Map	0.645
4i1uA	2	0.5688	1.6	0.965	Contact Map	0.217

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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