May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org

ALF1 - Fructose-bisphosphate aldolase class 1
UniProt: P0A991 Sequence
Download Alignment
We filter this alignment to remove sites that have > 75% gaps before running GREMLIN.
EcoGene: EG14062
Length: 350 (350)
Sequences: 187
Seq/Len: 0.53

ALF1
Paralog alert: 0.03 [within 20: 0.00] - ratio of genomes with paralogs
GREMLIN Results:
  • No predictions exist for P0A991
  • Not enough sequences to perform GREMLIN analysis on (0.53 < 1)
HHsearch Results: GREMLIN results overlayed on top 10 PDB hits:
Legend: Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on 10 HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov P(%) HHΔ   Acc
3iv3A10.83711000.676Contact Map
4mozA50.83141000.691Contact Map
3fokA100.77431000.704Contact Map
1to3A10.76861000.774Contact Map
1w8sA100.737199.90.848Contact Map
3glcA200.899.90.854Contact Map
2qjgA200.751499.90.873Contact Map
3oa3A20.754399.80.889Contact Map
3ndoA20.637199.30.919Contact Map
3r12A20.725799.30.92Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

Page generated in 0.8649 seconds.