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OPENSEQ.org

RS20 - 30S ribosomal protein S20
UniProt: P0A7U7 Sequence
Download Alignment
We filter this alignment to remove sites that have > 75% gaps before running GREMLIN.
EcoGene: EG10919
Length: 87 (87)
Sequences: 1377
Seq/Len: 15.83

RS20
Paralog alert: 0.00 [within 20: 0.00] - ratio of genomes with paralogs
GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Scaled Score Prob
43_D 46_A 3.125 1.00
59_D 76_K 3.027 1.00
35_V 83_I 2.929 1.00
2_A 11_A 2.905 1.00
14_S 18_R 2.552 1.00
33_K 37_A 2.296 1.00
71_K 75_H 2.226 1.00
26_S 30_T 2.171 1.00
44_K 48_Q 1.903 1.00
28_M 67_I 1.772 1.00
27_M 57_I 1.739 1.00
10_R 13_Q 1.738 1.00
15_E 18_R 1.732 1.00
49_K 52_N 1.722 1.00
74_R 78_N 1.69 1.00
8_K 12_I 1.676 1.00
36_Y 82_Q 1.582 1.00
55_Q 80_T 1.581 1.00
46_A 49_K 1.554 1.00
62_A 72_A 1.542 1.00
51_F 55_Q 1.5 1.00
18_R 22_A 1.488 1.00
48_Q 52_N 1.475 1.00
81_A 85_K 1.426 1.00
35_V 51_F 1.4 0.99
45_A 48_Q 1.398 0.99
13_Q 17_A 1.385 0.99
56_P 60_R 1.36 0.99
51_F 80_T 1.352 0.99
30_T 34_K 1.337 0.99
82_Q 85_K 1.295 0.99
45_A 49_K 1.291 0.99
67_I 71_K 1.278 0.99
46_A 50_A 1.257 0.99
51_F 83_I 1.228 0.98
20_H 24_R 1.196 0.98
27_M 31_F 1.184 0.98
24_R 66_L 1.16 0.97
80_T 84_N 1.129 0.97
16_K 20_H 1.097 0.96
53_E 57_I 1.086 0.96
35_V 39_I 1.073 0.95
28_M 61_Q 1.055 0.95
81_A 84_N 1.023 0.93
62_A 67_I 1.023 0.93
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Scaled Score = (raw_score/average(raw_scores)) > 1 are listed. For all 3L/2 predictions, click on one of the links below.
HHsearch Results:
PDB Chains Cov P(%) HHΔ   Acc
4kiyT11100-0.018Contact Map0.653
2vqeT11100-0.016Contact Map0.652
3bbnT11100-0.009Contact Map0.535
4bujB20.75865.20.914Contact Map0.28
3osrA20.47134.80.916Contact Map0.487
3avxA10.82763.30.922Contact Map0.524
2ifuA40.57472.30.928Contact Map0.748
2dl1A10.89662.20.929Contact Map0.43
2ra1A10.85061.90.931Contact Map0.527
2cp9A10.59771.90.931Contact Map0.656

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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