May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org

RL29 - 50S ribosomal protein L29
UniProt: P0A7M6 Sequence
Download Alignment
We filter this alignment to remove sites that have > 75% gaps before running GREMLIN.
EcoGene: EG10887
Length: 63 (62)
Sequences: 1138
Seq/Len: 18.35

RL29
Paralog alert: 0.00 [within 20: 0.00] - ratio of genomes with paralogs
GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Scaled Score Prob
17_E 20_N 3.304 1.00
11_V 60_K 2.714 1.00
10_S 13_E 2.522 1.00
58_N 61_A 2.402 1.00
9_K 17_E 2.283 1.00
16_T 20_N 2.136 1.00
14_L 53_V 2.04 1.00
7_R 59_E 2.001 1.00
49_D 52_R 1.962 1.00
23_R 27_N 1.936 1.00
18_L 53_V 1.808 1.00
56_L 59_E 1.79 1.00
32_A 43_L 1.768 1.00
24_E 42_L 1.759 1.00
3_A 56_L 1.599 1.00
22_L 54_K 1.573 1.00
42_L 45_Q 1.413 1.00
44_K 48_R 1.407 0.99
11_V 57_L 1.285 0.99
17_E 21_L 1.157 0.97
30_M 33_A 1.116 0.96
15_N 57_L 1.114 0.96
21_L 53_V 1.084 0.96
13_E 16_T 1.08 0.95
7_R 56_L 1.079 0.95
30_M 42_L 1.074 0.95
56_L 60_K 1.041 0.94
3_A 7_R 1.039 0.94
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Scaled Score = (raw_score/average(raw_scores)) > 1 are listed. For all 3L/2 predictions, click on one of the links below.
HHsearch Results:
PDB Chains Cov P(%) HHΔ   Acc
3bboZ1199.8-0.001Contact Map0.567
4kixY1199.80.009Contact Map0.445
3j3wX1199.80.015Contact Map0.578
1r73A1199.80.016Contact Map0.702
3v2d21199.80.016Contact Map0.898
3iz5c1199.80.017Contact Map0.558
2zjrV1199.80.018Contact Map0.403
3j21W1199.80.024Contact Map0.806
4a17U1199.80.028Contact Map0.738
3zf7k1199.80.028Contact Map0.963

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

Page generated in 1.0069 seconds.