OPENSEQ.org - MGSA - ECOLI GREMLIN

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MGSA - Methylglyoxal synthase

UniProt:	P0A731	Sequence MELTTRTLPARKHIALVAHDHCKQMLMSWVERHQPLLEQHVLYATGTTGNLISRATGMNVNAMLSGPMGGDQQVGALISEGKIDVLIFFWDPLNAVPHDPDVKALLRLATVWNIPVATNVATADFIIQSPHFNDAVDILIPDYQRYLADRLK	Download Alignment We filter this alignment to remove sites that have > 75% gaps before running GREMLIN.
EcoGene:	EG12307
Length:	152 (149)
Sequences:	554
Seq/Len:	3.72

MGSA
Paralog alert: 0.04 [within 20: 0.00] - ratio of genomes with paralogs

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Scaled Score	Prob
53_S	62_A	2.915	1.00
13_H	41_V	2.611	1.00
89_F	120_V	2.542	1.00
30_V	37_L	2.213	1.00
75_G	104_A	2.099	1.00
90_W	110_T	2.049	1.00
72_Q	75_G	1.985	1.00
44_A	49_G	1.978	1.00
34_Q	57_G	1.815	0.99
67_P	98_H	1.614	0.98
15_A	74_V	1.606	0.98
27_M	51_L	1.593	0.98
50_N	54_R	1.566	0.98
72_Q	104_A	1.56	0.98
47_T	65_S	1.559	0.98
64_L	112_W	1.534	0.98
29_W	89_F	1.53	0.98
30_V	52_I	1.484	0.97
46_G	62_A	1.482	0.97
25_M	120_V	1.476	0.97
73_Q	80_E	1.469	0.97
122_T	126_I	1.454	0.96
71_D	111_V	1.447	0.96
75_G	94_N	1.426	0.96
35_P	38_E	1.414	0.96
43_Y	77_L	1.411	0.96
67_P	97_P	1.411	0.96
63_M	77_L	1.39	0.95
17_V	86_L	1.383	0.95
64_L	79_S	1.355	0.94
43_Y	83_I	1.336	0.94
21_H	94_N	1.329	0.93
40_H	84_D	1.324	0.93
125_F	129_S	1.295	0.92
16_L	44_A	1.274	0.91
99_D	103_K	1.268	0.91
78_I	86_L	1.263	0.91
14_I	85_V	1.236	0.89
32_R	124_D	1.221	0.89
71_D	97_P	1.207	0.88
29_W	124_D	1.181	0.86
3_L	139_L	1.169	0.86
13_H	43_Y	1.164	0.85
85_V	126_I	1.131	0.83
78_I	108_L	1.127	0.83
73_Q	114_I	1.125	0.83
141_P	146_Y	1.12	0.82
144_Q	149_D	1.115	0.82
65_S	98_H	1.114	0.82
67_P	105_L	1.114	0.82
67_P	71_D	1.113	0.82
96_V	104_A	1.083	0.79
26_L	52_I	1.07	0.78
72_Q	108_L	1.068	0.78
21_H	96_V	1.066	0.78
24_Q	51_L	1.064	0.77
40_H	85_V	1.06	0.77
27_M	55_A	1.059	0.77
145_R	148_A	1.058	0.77
71_D	105_L	1.055	0.77
143_Y	146_Y	1.046	0.76
34_Q	53_S	1.037	0.75
78_I	112_W	1.031	0.74
98_H	101_D	1.025	0.74
98_H	102_V	1.016	0.73
77_L	80_E	1.015	0.73
67_P	101_D	1.015	0.73
43_Y	63_M	1.015	0.73
110_T	118_T	1.011	0.72
74_V	139_L	1.007	0.72
28_S	32_R	1.004	0.71
71_D	98_H	1.002	0.71

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Scaled Score = (raw_score/average(raw_scores)) > 1 are listed. For all 3L/2 predictions, click on one of the links below.

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling

HHsearch Results: GREMLIN results overlayed on top 10 PDB hits:

Legend: Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on 10 HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	P(%)	HHΔ		Acc
1b93A	3	1	100	0.418	Contact Map	0.685
1vmdA	2	1	100	0.438	Contact Map	0.608
2xw6A	3	0.8816	100	0.471	Contact Map	0.662
2yvqA	1	0.8158	99.9	0.61	Contact Map	0.455
1a9xA	4	0.9276	99.9	0.632	Contact Map	0.525
4ehiA	2	0.9671	96.7	0.889	Contact Map	0.516
1g8mA	2	0.9276	95.9	0.898	Contact Map	0.424
3zzmA	2	0.9605	95.4	0.901	Contact Map	0.349
1zczA	2	0.9211	77.8	0.93	Contact Map	0.419
2f5xA	3	0.9737	51.8	0.941	Contact Map	0.199

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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