May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org

YCIB - Probable intracellular septation protein A
UniProt: P0A710 Sequence
Download Alignment
We filter this alignment to remove sites that have > 75% gaps before running GREMLIN.
EcoGene: EG11122
Length: 179 (176)
Sequences: 490
Seq/Len: 2.78

YCIB
Paralog alert: 0.01 [within 20: 0.00] - ratio of genomes with paralogs
GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Scaled Score Prob
71_D 143_Q 3.366 1.00
102_Q 113_Q 3.14 1.00
41_W 45_R 2.962 1.00
75_K 143_Q 2.747 1.00
86_A 128_I 2.387 1.00
30_I 59_V 2.363 1.00
71_D 75_K 2.275 1.00
83_A 131_G 2.083 1.00
39_Y 43_R 2.076 1.00
63_G 67_F 2.029 1.00
142_P 145_I 2.017 1.00
37_L 47_V 1.881 0.99
130_C 154_L 1.875 0.99
12_V 28_A 1.845 0.99
29_L 58_V 1.812 0.99
161_F 165_S 1.759 0.99
23_Y 66_L 1.741 0.98
136_Y 141_L 1.689 0.98
10_L 151_V 1.663 0.98
86_A 124_A 1.633 0.97
125_V 129_L 1.517 0.95
85_F 127_F 1.501 0.95
82_Y 89_L 1.487 0.95
128_I 132_L 1.482 0.95
16_F 24_A 1.446 0.94
135_I 139_F 1.421 0.93
25_A 147_V 1.387 0.92
86_A 90_L 1.363 0.91
85_F 126_F 1.357 0.90
163_L 166_G 1.344 0.90
112_P 172_H 1.337 0.90
7_F 10_L 1.335 0.89
16_F 68_F 1.335 0.89
43_R 47_V 1.328 0.89
90_L 124_A 1.324 0.89
81_I 137_I 1.307 0.88
114_P 118_K 1.287 0.87
135_I 138_A 1.275 0.86
34_A 55_F 1.263 0.86
122_A 161_F 1.245 0.85
5_L 8_L 1.212 0.82
80_V 133_A 1.21 0.82
159_L 163_L 1.195 0.81
3_Q 7_F 1.193 0.81
101_I 120_N 1.185 0.80
38_I 97_K 1.182 0.80
90_L 121_L 1.175 0.80
26_T 62_G 1.163 0.79
101_I 104_M 1.146 0.77
34_A 52_L 1.146 0.77
2_K 25_A 1.139 0.77
37_L 55_F 1.138 0.76
109_L 129_L 1.135 0.76
92_S 101_I 1.122 0.75
112_P 115_V 1.097 0.73
22_I 26_T 1.096 0.73
68_F 75_K 1.086 0.72
100_L 120_N 1.076 0.71
144_N 160_I 1.071 0.70
28_A 54_T 1.069 0.70
21_D 24_A 1.067 0.70
1_M 4_F 1.058 0.69
36_V 51_A 1.056 0.68
23_Y 69_H 1.053 0.68
23_Y 68_F 1.053 0.68
99_P 102_Q 1.05 0.68
159_L 172_H 1.047 0.68
8_L 51_A 1.04 0.67
34_A 59_V 1.031 0.66
82_Y 130_C 1.024 0.65
95_V 120_N 1.023 0.65
129_L 145_I 1.021 0.65
56_V 60_V 1.017 0.64
42_V 160_I 1.015 0.64
49_K 92_S 1.012 0.64
57_L 88_A 1.008 0.63
149_F 153_G 1.006 0.63
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Scaled Score = (raw_score/average(raw_scores)) > 1 are listed. For all 3L/2 predictions, click on one of the links below.
HHsearch Results:
PDB Chains Cov P(%) HHΔ   Acc
2xq2A10.9553200.954Contact Map0.127
3arcY20.12291.70.972Contact Map0.482
3bz1y10.12291.70.972Contact Map0.514
4f35D40.86031.60.973Contact Map0.344
2ksrA10.40221.20.974Contact Map0.139
3qrxB10.14531.20.974Contact Map0
2mawA10.40781.20.975Contact Map0.189
3tijA10.748610.976Contact Map0.203
1g92A10.139710.976Contact Map0.312
4b19A10.1620.80.978Contact Map0.564

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

Page generated in 0.5179 seconds.