| UniProt: | P0A700 | Sequence |
Download Alignment We filter this alignment to remove sites that have > 75% gaps before running GREMLIN. |
| EcoGene: | EG10483 | ||
| Length: | 116 (114) | ||
| Sequences: | 780 | ||
| Seq/Len: | 6.84 |
| HYPA
Paralog alert: 0.48 [within 20: 0.01] - ratio of genomes with paralogs Cluster includes: HYBF HYPA |
Legend: The darker and larger the blue dots, the higher coevolution strength.
Residue pairs sorted by coevolution strength:
| i | j | Scaled Score | Prob | |
| 48_F | 62_L | 2.963 | 1.00 | |
| 48_F | 60_C | 2.641 | 1.00 | |
| 75_T | 97_M | 2.548 | 1.00 | |
| 23_A | 113_I | 2.394 | 1.00 | |
| 32_K | 107_Q | 2.354 | 1.00 | |
| 28_G | 63_H | 2.189 | 1.00 | |
| 32_K | 65_E | 2.11 | 1.00 | |
| 28_G | 61_K | 2.032 | 1.00 | |
| 17_Q | 20_K | 1.97 | 1.00 | |
| 32_K | 109_R | 1.967 | 1.00 | |
| 72_W | 79_Y | 1.962 | 1.00 | |
| 72_W | 99_Q | 1.96 | 1.00 | |
| 72_W | 77_Q | 1.922 | 1.00 | |
| 14_I | 26_V | 1.91 | 1.00 | |
| 27_T | 114_D | 1.719 | 1.00 | |
| 52_C | 59_G | 1.697 | 1.00 | |
| 18_A | 56_V | 1.684 | 1.00 | |
| 54_G | 58_E | 1.67 | 1.00 | |
| 6_L | 39_V | 1.656 | 1.00 | |
| 14_I | 111_I | 1.598 | 1.00 | |
| 78_Q | 92_Q | 1.571 | 1.00 | |
| 35_A | 66_E | 1.57 | 1.00 | |
| 7_C | 44_L | 1.569 | 1.00 | |
| 55_S | 58_E | 1.554 | 0.99 | |
| 30_W | 110_R | 1.523 | 0.99 | |
| 18_A | 23_A | 1.519 | 0.99 | |
| 9_R | 13_L | 1.505 | 0.99 | |
| 70_E | 102_A | 1.493 | 0.99 | |
| 71_C | 80_V | 1.492 | 0.99 | |
| 43_S | 46_F | 1.471 | 0.99 | |
| 74_E | 99_Q | 1.458 | 0.99 | |
| 70_E | 79_Y | 1.451 | 0.99 | |
| 71_C | 98_L | 1.435 | 0.99 | |
| 35_A | 68_E | 1.393 | 0.99 | |
| 108_I | 111_I | 1.38 | 0.99 | |
| 34_G | 103_D | 1.365 | 0.98 | |
| 6_L | 38_C | 1.345 | 0.98 | |
| 71_C | 82_L | 1.315 | 0.98 | |
| 30_W | 63_H | 1.297 | 0.98 | |
| 14_I | 108_I | 1.286 | 0.97 | |
| 53_R | 58_E | 1.251 | 0.97 | |
| 80_V | 98_L | 1.242 | 0.97 | |
| 25_R | 59_G | 1.226 | 0.96 | |
| 31_L | 64_L | 1.226 | 0.96 | |
| 41_T | 66_E | 1.204 | 0.96 | |
| 7_C | 43_S | 1.169 | 0.95 | |
| 28_G | 112_E | 1.154 | 0.94 | |
| 25_R | 114_D | 1.139 | 0.94 | |
| 67_Q | 105_G | 1.136 | 0.94 | |
| 8_Q | 51_V | 1.122 | 0.93 | |
| 11_L | 51_V | 1.115 | 0.93 | |
| 12_E | 15_E | 1.113 | 0.93 | |
| 11_L | 57_A | 1.096 | 0.92 | |
| 79_Y | 101_V | 1.07 | 0.91 | |
| 14_I | 29_V | 1.062 | 0.90 | |
| 5_T | 9_R | 1.054 | 0.90 | |
| 10_A | 31_L | 1.053 | 0.90 | |
| 43_S | 47_C | 1.049 | 0.89 | |
| 13_L | 108_I | 1.04 | 0.89 | |
| 18_A | 26_V | 1 | 0.86 |
- Text file of predictions (all 3L/2 predictions)
- Generate restraints for ROSETTA Structure Modeling
Legend: Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on 10 HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
| PDB | Chains | Cov | P(%) | HHΔ | Acc | |
| 3a43A | 2 | 0.9914 | 100 | 0.031 | Contact Map | 0.803 |
| 2kdxA | 1 | 0.9914 | 100 | 0.049 | Contact Map | 0.716 |
| 2k2dA | 1 | 0.6379 | 99 | 0.667 | Contact Map | 0.706 |
| 3pwfA | 2 | 0.8103 | 95.5 | 0.824 | Contact Map | 0.53 |
| 1lkoA | 1 | 0.8621 | 95.5 | 0.824 | Contact Map | 0.482 |
| 2lcqA | 1 | 0.8879 | 95 | 0.83 | Contact Map | 0.378 |
| 4aybP | 1 | 0.3793 | 94.9 | 0.831 | Contact Map | 0.041 |
| 1yuzA | 2 | 0.7759 | 93.9 | 0.839 | Contact Map | 0.609 |
| 1s24A | 1 | 0.5517 | 81.2 | 0.873 | Contact Map | 0.729 |
| 3h0gL | 2 | 0.5431 | 80.7 | 0.873 | Contact Map | 0.593 |
Sequence Conservation (Image Generated using WebLogo v3)