May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org

ARGA - Amino-acid acetyltransferase
UniProt: P0A6C5 Sequence
Download Alignment
We filter this alignment to remove sites that have > 75% gaps before running GREMLIN.
EcoGene: EG10063
Length: 443 (439)
Sequences: 342
Seq/Len: 0.78

ARGA
Paralog alert: 0.01 [within 20: 0.00] - ratio of genomes with paralogs
GREMLIN Results:
  • No predictions exist for P0A6C5
  • Not enough sequences to perform GREMLIN analysis on (0.78 < 1)
HHsearch Results: GREMLIN results overlayed on top 10 PDB hits:
Legend: Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on 10 HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov P(%) HHΔ   Acc
3d2mA10.97971000.539Contact Map
3s6kA10.9211000.608Contact Map
3s6gA40.91651000.61Contact Map
4ab7A80.93681000.621Contact Map
2ap9A60.65461000.688Contact Map
2v5hA60.65691000.688Contact Map
2bufA120.64791000.688Contact Map
2rd5A20.63431000.698Contact Map
2btyA30.62981000.701Contact Map
3zzhA40.62751000.724Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

Page generated in 0.9531 seconds.