| UniProt: | P03014 | Sequence |
Download Alignment We filter this alignment to remove sites that have > 75% gaps before running GREMLIN. |
| EcoGene: | EG10737 | ||
| Length: | 184 (181) | ||
| Sequences: | 4154 | ||
| Seq/Len: | 22.95 |
| PINE
Paralog alert: 0.63 [within 20: 0.19] - ratio of genomes with paralogs Cluster includes: PINE PINQ PINR |
Legend: The darker and larger the blue dots, the higher coevolution strength.
Residue pairs sorted by coevolution strength:
| i | j | Scaled Score | Prob | |
| 44_G | 47_K | 3.934 | 1.00 | |
| 31_F | 51_T | 3.48 | 1.00 | |
| 48_L | 58_L | 2.902 | 1.00 | |
| 33_D | 44_G | 2.679 | 1.00 | |
| 154_L | 167_I | 2.658 | 1.00 | |
| 6_V | 19_R | 2.412 | 1.00 | |
| 115_E | 122_R | 2.408 | 1.00 | |
| 19_R | 23_N | 2.233 | 1.00 | |
| 80_L | 85_I | 2.2 | 1.00 | |
| 89_S | 92_D | 2.14 | 1.00 | |
| 103_F | 114_M | 2.132 | 1.00 | |
| 129_T | 133_Q | 2.07 | 1.00 | |
| 162_Q | 166_I | 2.054 | 1.00 | |
| 102_R | 117_E | 2.031 | 1.00 | |
| 150_Q | 154_L | 1.986 | 1.00 | |
| 4_G | 22_L | 1.97 | 1.00 | |
| 70_M | 106_H | 1.957 | 1.00 | |
| 19_R | 30_I | 1.911 | 1.00 | |
| 113_E | 117_E | 1.893 | 1.00 | |
| 106_H | 110_A | 1.821 | 1.00 | |
| 102_R | 113_E | 1.807 | 1.00 | |
| 10_T | 13_Q | 1.778 | 1.00 | |
| 154_L | 159_T | 1.754 | 1.00 | |
| 123_T | 127_L | 1.753 | 1.00 | |
| 71_R | 75_V | 1.749 | 1.00 | |
| 159_T | 167_I | 1.727 | 1.00 | |
| 19_R | 32_E | 1.718 | 1.00 | |
| 103_F | 110_A | 1.692 | 1.00 | |
| 120_V | 124_K | 1.687 | 1.00 | |
| 20_N | 24_C | 1.678 | 1.00 | |
| 70_M | 109_G | 1.674 | 1.00 | |
| 79_E | 83_R | 1.672 | 1.00 | |
| 3_I | 48_L | 1.626 | 1.00 | |
| 52_L | 58_L | 1.61 | 1.00 | |
| 45_L | 76_L | 1.592 | 1.00 | |
| 38_T | 116_R | 1.59 | 1.00 | |
| 130_A | 135_R | 1.562 | 1.00 | |
| 81_R | 102_R | 1.512 | 1.00 | |
| 73_L | 109_G | 1.468 | 1.00 | |
| 70_M | 74_V | 1.464 | 1.00 | |
| 52_L | 85_I | 1.457 | 1.00 | |
| 29_L | 47_K | 1.427 | 1.00 | |
| 165_A | 175_L | 1.422 | 1.00 | |
| 116_R | 119_I | 1.411 | 1.00 | |
| 74_V | 106_H | 1.396 | 0.99 | |
| 3_I | 51_T | 1.368 | 0.99 | |
| 172_V | 176_Y | 1.307 | 0.99 | |
| 128_E | 132_A | 1.303 | 0.99 | |
| 8_V | 13_Q | 1.297 | 0.99 | |
| 155_I | 164_V | 1.29 | 0.99 | |
| 77_V | 105_F | 1.279 | 0.99 | |
| 78_E | 82_E | 1.277 | 0.99 | |
| 71_R | 78_E | 1.276 | 0.99 | |
| 64_D | 112_A | 1.256 | 0.99 | |
| 159_T | 163_K | 1.24 | 0.98 | |
| 98_T | 101_G | 1.229 | 0.98 | |
| 67_G | 73_L | 1.222 | 0.98 | |
| 23_N | 30_I | 1.209 | 0.98 | |
| 162_Q | 172_V | 1.207 | 0.98 | |
| 60_V | 87_F | 1.203 | 0.98 | |
| 4_G | 30_I | 1.2 | 0.98 | |
| 160_P | 163_K | 1.197 | 0.98 | |
| 126_G | 130_A | 1.196 | 0.98 | |
| 35_I | 43_P | 1.192 | 0.98 | |
| 153_R | 157_A | 1.177 | 0.98 | |
| 41_E | 46_K | 1.176 | 0.98 | |
| 2_L | 88_R | 1.166 | 0.97 | |
| 127_L | 137_G | 1.157 | 0.97 | |
| 144_T | 147_Q | 1.152 | 0.97 | |
| 6_V | 15_T | 1.148 | 0.97 | |
| 31_F | 48_L | 1.145 | 0.97 | |
| 61_W | 125_A | 1.129 | 0.97 | |
| 124_K | 127_L | 1.116 | 0.96 | |
| 154_L | 164_V | 1.088 | 0.96 | |
| 57_T | 88_R | 1.085 | 0.96 | |
| 45_L | 48_L | 1.075 | 0.95 | |
| 151_A | 175_L | 1.066 | 0.95 | |
| 155_I | 179_F | 1.061 | 0.95 | |
| 151_A | 164_V | 1.056 | 0.95 | |
| 60_V | 89_S | 1.054 | 0.95 | |
| 62_K | 91_T | 1.047 | 0.94 | |
| 129_T | 132_A | 1.047 | 0.94 | |
| 154_L | 157_A | 1.046 | 0.94 | |
| 103_F | 111_L | 1.045 | 0.94 | |
| 22_L | 59_V | 1.031 | 0.94 | |
| 148_W | 151_A | 1.028 | 0.94 | |
| 2_L | 27_C | 1.027 | 0.94 | |
| 175_L | 178_R | 1.025 | 0.93 | |
| 107_V | 110_A | 1.023 | 0.93 | |
| 45_L | 66_L | 1.016 | 0.93 | |
| 127_L | 131_R | 1.016 | 0.93 | |
| 64_D | 122_R | 1.007 | 0.93 | |
| 118_L | 122_R | 1.006 | 0.93 | |
| 35_I | 39_K | 1.004 | 0.93 | |
| 47_K | 51_T | 1.004 | 0.93 |
- Text file of predictions (all 3L/2 predictions)
- Generate restraints for ROSETTA Structure Modeling
Legend: Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on 10 HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
| PDB | Chains | Cov | P(%) | HHΔ | Acc | |
| 3uj3X | 1 | 1 | 100 | 0.073 | Contact Map | 0.408 |
| 2r0qC | 4 | 1 | 100 | 0.102 | Contact Map | 0.65 |
| 1gdtA | 2 | 0.9783 | 100 | 0.121 | Contact Map | 0.647 |
| 4bqqA | 2 | 0.9837 | 100 | 0.271 | Contact Map | 0.678 |
| 3g13A | 2 | 0.8043 | 100 | 0.334 | Contact Map | 0.562 |
| 2gm5A | 4 | 0.7446 | 100 | 0.341 | Contact Map | 0.847 |
| 3guvA | 1 | 0.788 | 100 | 0.351 | Contact Map | 0.525 |
| 3pkzA | 12 | 0.625 | 100 | 0.414 | Contact Map | 0.777 |
| 3lhkA | 4 | 0.7663 | 100 | 0.425 | Contact Map | 0.618 |
| 3ilxA | 2 | 0.6957 | 99.9 | 0.439 | Contact Map | 0.617 |
Sequence Conservation (Image Generated using WebLogo v3)