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HsapCycD1 truncated v Hsap RB1 truncated (B, 400-628) (B, 100-220)

Genes: A B A+B
Length: 200 121 321
Sequences: 2738 22 3
Seq/Len: 13.69 0.18 0.01
Download Alignment
We filter this alignment to remove positions that have > 75% gaps before running GREMLIN.

[Show HHblits results] - Maybe useful in deciding what regions to trim.

Δgene Ratio of paralogs Joined
A B Seq/Len
1 0.12 0.03 0.00
2 0.12 0.03 0.00
5 0.12 0.03 0.00
10 0.12 0.03 0.00
20 0.13 0.03 0.00
100 0.16 0.03 0.01
0.19 0.03 0.01
Paired alignment generation
None of the genomes have hits within 20 Δgene.
Sequence A E-value:
Iterations:
Sequence B E-value:
Iterations:
Δgene MSA
Figure 1: The effect of Δgene on ratio of paralogs in the genome for each gene, and the number of sequences in the resulting joined alignment. Figure 2: Distribution of Δgene across all genomes. Figure 3: Current parameters. You can use the form to adjust the parameters and resubmit the job!

GREMLIN results
  • ERROR: Not enough sequences to run GREMLIN analysis on (0.01 < 0.6).

ID Seq/Len Name Options I_Prob Status
8274 0.01 HsapCycD1 truncated v Hsap RB1 truncated (B, 400-628) (B, 100-220) Δgene:(0, ∞) A:(1E-10, 8) B:(1E-02, 8) msa: Jackhmmer (r132) Killed - Shared
8273 0.01 HsapCycD1 truncated v Hsap RB1 truncated (B, 400-628) (B, 100-220) Δgene:(0, ∞) A:(1E-10, 8) B:(1E-02, 8) msa: HHblits (2015_06) Killed - Shared

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