OPENSEQ.org
acp-isd11

Genes: A B A+B
Length: 88 90 178
Sequences: 38949 356 3
Seq/Len: 442.6 3.96 0.02
Download Alignment
We filter this alignment to remove positions that have > 75% gaps before running GREMLIN.

[Show Jackhmmer results] - Maybe useful in deciding what regions to trim.

Δgene Ratio of paralogs Joined
A B Seq/Len
1 0.86 0.03 0.01
2 0.86 0.03 0.01
5 0.86 0.03 0.01
10 0.86 0.03 0.01
20 0.86 0.03 0.02
100 0.86 0.03 0.04
0.86 0.03 0.27
Paired alignment generation
0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20
Sequence A E-value:
Iterations:
Sequence B E-value:
Iterations:
Δgene MSA
Figure 1: The effect of Δgene on ratio of paralogs in the genome for each gene, and the number of sequences in the resulting joined alignment. Figure 2: Distribution of Δgene across all genomes. Figure 3: Current parameters. You can use the form to adjust the parameters and resubmit the job!

GREMLIN results
  • ERROR: Not enough sequences to run GREMLIN analysis on (0.02 < 0.6).
WARNING: The input alignment may be corrupted!
  • For sequence A, there is a high ratio (0.86 > 0.4) of paralogs.

ID Seq/Len Name Options I_Prob Status
8224 0.02 acp-isd11 Δgene:(1, 20) A:(1E-20, 8) B:(1E-20, 8) msa: Jackhmmer (r132) Killed - Shared
8221 0.05 ACP-ISD11 Δgene:(1, 100) A:(1E-20, 8) B:(1E-20, 8) msa: Jackhmmer (r132) Killed - Shared

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