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pred_2HRK_l_u_ApdbAfas_2HRK_r_u_ApdbAfastable_PRtxt

Genes: A B A+B
Length: 103 180 283
Sequences: 1 15736 1
Seq/Len: 0.01 87.42 0
Download Alignment
We filter this alignment to remove positions that have > 75% gaps before running GREMLIN.

[Show HHblits results] - Maybe useful in deciding what regions to trim.

Δgene Ratio of paralogs Joined
A B Seq/Len
1 1.00 0.07 0.00
2 1.00 0.07 0.00
5 1.00 0.09 0.00
10 1.00 0.10 0.00
20 1.00 0.12 0.00
100 1.00 0.18 0.00
1.00 0.25 0.01
Paired alignment generation
None of the genomes have hits within 20 Δgene.
Sequence A E-value:
Iterations:
Sequence B E-value:
Iterations:
Δgene MSA
Figure 1: The effect of Δgene on ratio of paralogs in the genome for each gene, and the number of sequences in the resulting joined alignment. Figure 2: Distribution of Δgene across all genomes. Figure 3: Current parameters. You can use the form to adjust the parameters and resubmit the job!

GREMLIN results
  • ERROR: Not enough sequences to run GREMLIN analysis on (0 < 0.6).
WARNING: The input alignment may be corrupted!
  • For sequence A, there is a high ratio (1.00 > 0.4) of paralogs.

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