OPENSEQ.org
BM

Genes: A B A+B
Length: 1046 485 1435
Sequences: 3080 13022 952
Seq/Len: 2.94 26.85 0.66
MirrorTree (Pazo et al. 2001) 0.58
Download Alignment
We filter this alignment to remove positions that have > 75% gaps before running GREMLIN.

[Show HHblits results] - Maybe useful in deciding what regions to trim.

Δgene Ratio of paralogs Joined
A B Seq/Len
1 0.02 0.00 0.20
2 0.02 0.00 0.46
5 0.02 0.02 0.55
10 0.03 0.04 0.60
20 0.03 0.06 0.62
100 0.06 0.14 0.81
0.17 0.21 1.26
Paired alignment generation
0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20
Sequence A E-value:
Iterations:
Sequence B E-value:
Iterations:
Δgene MSA
Figure 1: The effect of Δgene on ratio of paralogs in the genome for each gene, and the number of sequences in the resulting joined alignment. Figure 2: Distribution of Δgene across all genomes. Figure 3: Current parameters. You can use the form to adjust the parameters and resubmit the job!

GREMLIN results
  • Analysis in progress...

ID Seq/Len Name Options I_Prob Status
8134 0.67 BM Δgene:(1, 20) A:(1E-06, 8) B:(1E-20, 8) msa: HHblits (2015_06) Running
8131 0.66 BM Δgene:(1, 20) A:(1E-20, 8) B:(1E-20, 8) msa: HHblits (2015_06) Running - Shared

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