May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org
subFG00
Genes: A B A+B
Length: 263 255 473
Sequences: 2261 1857 1416
Seq/Len: 8.6 7.28 2.99
MirrorTree (Pazo et al. 2001) 0.99
Download Alignment
We filter this alignment to remove positions that have > 75% gaps before running GREMLIN.

[Show HHblits results] - Maybe useful in deciding what regions to trim.
Δgene Ratio of paralogs Joined
A B Seq/Len
1 0.12 0.14 2.73
2 0.12 0.15 2.73
5 0.12 0.15 2.75
10 0.12 0.16 2.75
20 0.13 0.16 2.75
100 0.14 0.18 2.74
∞ 0.23 0.26 2.79
Paired alignment generation
0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20
Sequence A E-value:
Iterations:
Sequence B E-value:
Iterations:
Δgene MSA
Figure 1: The effect of Δgene on ratio of paralogs in the genome for each gene, and the number of sequences in the resulting joined alignment. Figure 2: Distribution of Δgene across all genomes. Figure 3: Current parameters. You can use the form to adjust the parameters and resubmit the job!
GREMLIN results (Scaled_score > 1):
Figure 4: The darker and larger the blue dots, the higher strength in coevolution. 		Inter Residue pairs sorted by strength in coevolution signal:
i j Scaled Score Prob I_Prob
185_N 188_R 4.74 1.00 1.00
186_E 189_D 4.59 1.00 1.00
41_K 43_K 4.44 1.00 1.00
188_V 191_V 4.40 1.00 1.00
212_I 214_L 4.33 1.00 1.00
38_L 40_I 4.22 1.00 1.00
189_K 192_K 4.16 1.00 1.00
68_N 72_R 4.16 1.00 1.00
36_V 38_I 4.16 1.00 1.00
72_I 76_M 4.04 1.00 1.00
102_P 106_N 3.98 1.00 1.00
63_I 67_L 3.97 1.00 1.00
42_T 44_D 3.96 1.00 1.00
216_G 218_G 3.92 1.00 1.00
134_I 138_L 3.91 1.00 1.00
98_V 102_N 3.88 1.00 1.00
215_V 217_V 3.86 1.00 1.00
137_Y 141_Y 3.86 1.00 1.00
39_K 41_R 3.86 1.00 1.00
214_I 216_W 3.85 1.00 1.00
145_F 150_Y 3.85 1.00 1.00
193_R 196_K 3.85 1.00 1.00
66_V 70_V 3.84 1.00 1.00
112_I 116_V 3.83 1.00 1.00
192_L 195_A 3.78 1.00 1.00
105_V 109_L 3.77 1.00 1.00
70_I 74_V 3.73 1.00 1.00
143_H 148_Q 3.70 1.00 1.00
184_L 187_C 3.69 1.00 1.00
217_K 219_E 3.67 1.00 1.00
157_R 162_W 3.65 1.00 1.00
159_M 164_C 3.65 1.00 1.00
207_T 209_A 3.62 1.00 1.00
154_F 159_Y 3.60 1.00 1.00
46_L 48_F 3.59 1.00 1.00
85_C 89_A 3.59 1.00 1.00
170_T 175_T 3.58 1.00 1.00
53_Q 55_L 3.57 1.00 1.00
167_S 172_A 3.55 1.00 1.00
218_D 220_L 3.54 1.00 1.00
179_F 184_E 3.53 1.00 1.00
100_D 104_G 3.53 1.00 1.00
210_V 212_L 3.52 1.00 1.00
208_K 210_F 3.52 1.00 1.00
94_D 98_N 3.51 1.00 1.00
86_N 90_D 3.50 1.00 1.00
45_V 47_V 3.50 1.00 1.00
197_E 200_I 3.50 1.00 1.00
52_A 54_V 3.46 1.00 1.00
175_H 180_L 3.45 1.00 1.00
177_S 182_M 3.44 1.00 1.00
104_P 108_P 3.44 1.00 1.00
213_G 215_S 3.43 1.00 1.00
101_R 105_Y 3.43 1.00 1.00
118_I 122_A 3.42 1.00 1.00
65_H 69_N 3.41 1.00 1.00
135_A 139_G 3.40 1.00 1.00
161_I 166_I 3.38 1.00 1.00
113_G 117_A 3.38 1.00 1.00
191_G 194_V 3.38 1.00 1.00
64_L 68_F 3.37 1.00 1.00
106_S 110_K 3.37 1.00 1.00
103_L 107_I 3.34 1.00 1.00
166_Q 171_Q 3.34 1.00 1.00
206_T 208_K 3.30 1.00 1.00
140_M 145_D 3.29 1.00 1.00
178_E 183_K 3.29 1.00 1.00
111_L 115_R 3.29 1.00 1.00
107_R 111_H 3.28 1.00 1.00
114_S 118_M 3.28 1.00 1.00
61_K 65_K 3.26 1.00 1.00
160_S 165_A 3.24 1.00 1.00
190_H 193_E 3.23 1.00 1.00
147_T 152_I 3.22 1.00 1.00
90_Q 94_E 3.22 1.00 1.00
47_V 49_G 3.22 1.00 1.00
198_T 201_V 3.21 1.00 1.00
109_V 113_A 3.21 1.00 1.00
183_N 186_T 3.21 1.00 1.00
44_A 46_V 3.20 1.00 1.00
40_S 42_C 3.20 1.00 1.00
141_G 146_G 3.19 1.00 1.00
165_S 170_R 3.17 1.00 1.00
169_R 174_K 3.17 1.00 1.00
196_R 199_Y 3.16 1.00 1.00
130_V 134_C 3.12 1.00 1.00
60_Q 64_N 3.11 1.00 1.00
96_R 100_R 3.10 1.00 1.00
171_Y 176_E 3.09 1.00 1.00
174_R 179_K 3.06 1.00 1.00
194_A 197_I 3.05 1.00 1.00
116_T 120_V 3.03 1.00 1.00
35_T 37_A 3.01 1.00 1.00
155_D 160_G 3.01 1.00 1.00
115_K 119_Y 3.01 1.00 1.00
73_S 77_A 3.00 1.00 1.00
153_Y 158_S 3.00 1.00 1.00
110_S 114_D 2.98 1.00 1.00
84_L 88_L 2.98 1.00 1.00
176_M 181_Q 2.98 1.00 1.00
71_G 75_G 2.96 1.00 1.00
91_E 95_E 2.95 1.00 1.00
83_L 87_S 2.94 1.00 1.00
132_L 136_F 2.93 1.00 1.00
75_A 79_A 2.93 1.00 1.00
142_P 147_A 2.90 1.00 1.00
187_L 190_I 2.90 1.00 1.00
48_A 50_V 2.89 1.00 1.00
172_L 177_I 2.89 1.00 1.00
69_H 73_H 2.88 1.00 1.00
95_S 99_F 2.88 1.00 1.00
133_L 137_M 2.88 1.00 1.00
168_A 173_A 2.87 1.00 1.00
125_R 129_V 2.84 1.00 1.00
200_P 203_D 2.83 1.00 1.00
152_N 157_V 2.83 1.00 1.00
119_P 123_Y 2.79 1.00 1.00
205_L 207_D 2.78 1.00 1.00
128_Y 132_F 2.78 1.00 1.00
97_F 101_S 2.77 1.00 1.00
74_I 78_V 2.75 1.00 1.00
199_L 202_H 2.75 1.00 1.00
122_R 126_Y 2.73 1.00 1.00
81_A 85_A 2.70 1.00 1.00
227_D 231_D 2.68 1.00 1.00
144_I 149_L 2.67 1.00 1.00
87_F 91_I 2.66 1.00 1.00
79_A 83_A 2.63 1.00 1.00
164_R 169_A 2.61 1.00 1.00
180_M 185_M 2.59 1.00 1.00
146_Q 151_M 2.52 1.00 1.00
54_S 56_S 2.50 1.00 1.00
201_A 204_E 2.48 1.00 1.00
131_G 135_S 2.48 1.00 1.00
78_T 82_L 2.46 1.00 1.00
55_E 57_K 2.45 1.00 1.00
99_F 103_F 2.44 1.00 1.00
37_G 39_G 2.42 1.00 1.00
163_A 168_K 2.42 1.00 1.00
209_N 211_E 2.40 1.00 0.99
59_H 63_S 2.38 1.00 0.99
123_Y 127_S 2.37 1.00 0.99
108_L 112_L 2.36 1.00 0.99
51_R 53_L 2.36 1.00 0.99
77_L 81_L 2.36 1.00 0.99
29_V 31_V 2.35 1.00 0.99
58_A 62_G 2.32 1.00 0.99
34_A 36_T 2.30 1.00 0.99
89_R 93_R 2.29 1.00 0.99
173_E 178_E 2.29 1.00 0.99
158_A 163_G 2.27 1.00 0.99
88_M 92_A 2.26 1.00 0.99
138_D 142_S 2.22 1.00 0.99
226_D 230_K 2.19 1.00 0.99
195_L 198_I 2.18 1.00 0.99
50_K 52_K 2.17 1.00 0.99
225_D 229_P 2.15 1.00 0.99
224_Y 228_V 2.14 1.00 0.99
93_L 97_S 2.14 1.00 0.99
222_T 226_E 2.13 1.00 0.99
56_L 58_L 2.11 1.00 0.99
211_S 213_E 2.10 1.00 0.99
148_C 153_D 2.06 1.00 0.99
139_D 143_V 2.02 1.00 0.98
67_D 71_D 2.02 1.00 0.98
92_C 96_A 2.02 1.00 0.98
10_V 12_A 2.02 1.00 0.98
19_I 21_V 2.00 1.00 0.98
82_R 86_R 1.96 0.99 0.98
182_C 185_M 1.95 0.99 0.98
156_C 161_Y 1.94 0.99 0.98
150_S 155_S 1.93 0.99 0.98
27_E 29_K 1.91 0.99 0.98
12_V 14_T 1.88 0.99 0.97
26_M 28_M 1.88 0.99 0.97
49_L 51_E 1.83 0.99 0.97
22_I 24_V 1.79 0.99 0.96
117_Q 121_H 1.77 0.99 0.96
20_H 22_F 1.75 0.99 0.96
23_E 25_E 1.69 0.98 0.95
5_Q 7_G 1.66 0.98 0.94
57_A 61_E 1.65 0.98 0.94
231_P 235_E 1.65 0.98 0.94
223_I 227_I 1.64 0.98 0.94
220_E 224_R 1.62 0.98 0.93
28_A 30_A 1.61 0.97 0.93
16_Q 18_D 1.61 0.97 0.93
11_T 13_S 1.61 0.97 0.93
121_Q 125_L 1.60 0.97 0.93
230_S 234_E 1.59 0.97 0.93
149_P 154_P 1.56 0.97 0.92
13_W 15_F 1.56 0.97 0.92
32_G 34_S 1.55 0.96 0.91
124_G 128_A 1.54 0.96 0.91
181_E 186_T 1.51 0.96 0.90
136_G 140_S 1.49 0.95 0.90
30_K 32_E 1.49 0.95 0.89
228_D 232_I 1.46 0.95 0.88
9_D 11_S 1.45 0.94 0.88
232_F 236_A 1.44 0.94 0.88
18_R 20_R 1.42 0.94 0.86
219_L 223_G 1.39 0.93 0.85
229_V 233_R 1.38 0.92 0.84
120_T 124_T 1.37 0.92 0.84
43_H 45_G 1.36 0.92 0.83
139_D 144_N 1.35 0.91 0.83
203_Q 206_K 1.33 0.91 0.81
57_A 59_Y 1.32 0.90 0.81
221_F 225_H 1.32 0.90 0.81
129_G 133_G 1.28 0.88 0.78
31_Q 33_N 1.25 0.86 0.75
24_Y 26_Y 1.25 0.86 0.75
8_N 10_L 1.15 0.79 0.66
15_P 17_P 1.11 0.76 0.63
181_E 184_E 1.08 0.73 0.59
31_Q 34_S 1.08 0.73 0.59
14_S 16_S 1.08 0.73 0.59
6_Y 8_Y 1.00 0.65 0.49
7_D 9_D 0.99 0.64 0.48
80_D 84_D 0.98 0.63 0.48
203_Q 205_V 0.96 0.60 0.45
33_S 35_S 0.96 0.60 0.44
204_D 206_K 0.95 0.58 0.43
4_N 6_T 0.92 0.55 0.40
62_K 66_R 0.91 0.54 0.38
58_A 60_E 0.90 0.53 0.38
202_E 205_V 0.88 0.50 0.35
127_P 131_P 0.78 0.37 0.23
126_R 130_R 0.77 0.36 0.23
151_A 156_G 0.75 0.34 0.21
59_H 61_E 0.73 0.32 0.19
140_M 144_N 0.68 0.27 0.15
25_A 27_A 0.64 0.23 0.12
180_M 183_K 0.60 0.20 0.10
205_L 206_K 0.58 0.18 0.09
191_G 49_G 0.57 0.18 0.08
217_K 222_N 0.56 0.17 0.08
47_V 194_V 0.54 0.16 0.07
21_Q 23_Q 0.51 0.14 0.06
186_E 186_T 0.49 0.12 0.05
17_G 19_G 0.47 0.12 0.04
221_F 75_G 0.46 0.11 0.04
183_N 189_D 0.41 0.09 0.03
54_S 63_S 0.40 0.09 0.03
3_R 5_G 0.38 0.08 0.02
179_F 182_M 0.36 0.07 0.02
187_L 42_C 0.35 0.07 0.02
40_S 190_I 0.34 0.07 0.02
221_F 215_S 0.34 0.07 0.02
46_L 39_G 0.34 0.06 0.02
37_G 48_F 0.34 0.06 0.02
46_L 139_G 0.32 0.06 0.01
178_E 181_Q 0.32 0.06 0.01
155_D 148_Q 0.30 0.05 0.01
143_H 160_G 0.30 0.05 0.01
121_Q 124_T 0.29 0.05 0.01
213_G 225_H 0.29 0.05 0.01
67_D 73_H 0.28 0.05 0.01
135_A 48_F 0.28 0.05 0.01
69_H 71_D 0.28 0.05 0.01
141_G 145_D 0.28 0.05 0.01
40_S 44_D 0.28 0.05 0.01
42_T 42_C 0.27 0.05 0.01
9_D 14_T 0.27 0.05 0.01
9_D 10_L 0.27 0.04 0.01
8_N 11_S 0.27 0.04 0.01
140_M 146_G 0.27 0.04 0.01
37_G 149_L 0.26 0.04 0.01
120_T 121_H 0.26 0.04 0.01
12_V 11_S 0.26 0.04 0.01
168_A 36_T 0.26 0.04 0.01
144_I 39_G 0.26 0.04 0.01
117_Q 124_T 0.26 0.04 0.01
18_R 25_E 0.25 0.04 0.01
34_A 173_A 0.25 0.04 0.01
23_E 20_R 0.25 0.04 0.01
191_G 40_I 0.25 0.04 0.01
212_I 191_V 0.24 0.04 0.01
4_N 7_G 0.24 0.04 0.01
3_R 7_G 0.24 0.04 0.01
162_G 167_G 0.24 0.04 0.01
38_L 194_V 0.24 0.04 0.01
224_Y 233_R 0.24 0.04 0.01
188_V 214_L 0.24 0.04 0.01
208_K 209_A 0.24 0.04 0.01
42_T 43_K 0.23 0.04 0.01
41_K 44_D 0.23 0.04 0.01
6_Y 17_P 0.23 0.04 0.01
67_D 100_R 0.23 0.04 0.01
102_P 71_D 0.23 0.04 0.01
120_T 125_L 0.23 0.04 0.01
67_D 106_N 0.23 0.04 0.01
193_R 180_L 0.23 0.04 0.01
96_R 71_D 0.23 0.04 0.01
10_V 13_S 0.23 0.04 0.01
172_L 134_C 0.22 0.04 0.01
202_E 204_E 0.22 0.04 0.01
130_V 177_I 0.22 0.04 0.01
175_H 196_K 0.22 0.04 0.01
136_G 109_L 0.22 0.04 0.01
217_K 141_Y 0.22 0.04 0.01
175_H 193_E 0.22 0.04 0.01
15_P 8_Y 0.22 0.04 0.01
129_G 130_R 0.22 0.04 0.01
126_R 133_G 0.21 0.04 0.01
70_I 109_L 0.21 0.04 0.01
11_T 12_A 0.21 0.04 0.01
2_F 7_G 0.21 0.04 0.01
4_N 10_L 0.21 0.04 0.01
105_V 74_V 0.21 0.04 0.01
229_V 228_V 0.21 0.04 0.01
9_D 12_A 0.21 0.03 0.01
105_V 140_S 0.21 0.03 0.01
43_H 190_I 0.21 0.03 0.01
76_G 80_G 0.21 0.03 0.01
5_Q 8_Y 0.20 0.03 0.01
72_I 70_V 0.20 0.03 0.01
135_A 140_S 0.20 0.03 0.01
133_L 166_I 0.20 0.03 0.01
190_H 180_L 0.20 0.03 0.01
159_M 137_M 0.20 0.03 0.01
6_Y 7_G 0.20 0.03 0.00
143_H 146_G 0.20 0.03 0.00
10_V 11_S 0.20 0.03 0.00
11_T 8_Y 0.20 0.03 0.00
23_E 26_Y 0.20 0.03 0.00
35_T 77_A 0.20 0.03 0.00
45_V 191_V 0.20 0.03 0.00
187_L 45_G 0.20 0.03 0.00
66_V 76_M 0.20 0.03 0.00
6_Y 13_S 0.20 0.03 0.00
141_G 148_Q 0.20 0.03 0.00
111_L 95_E 0.20 0.03 0.00
138_D 143_V 0.19 0.03 0.00
155_D 150_Y 0.19 0.03 0.00
73_S 37_A 0.19 0.03 0.00
188_V 47_V 0.19 0.03 0.00
34_A 169_A 0.19 0.03 0.00
30_K 35_S 0.19 0.03 0.00
5_Q 9_D 0.19 0.03 0.00
91_E 115_R 0.19 0.03 0.00
164_R 36_T 0.19 0.03 0.00
20_H 17_P 0.19 0.03 0.00
145_F 160_G 0.19 0.03 0.00
27_E 32_E 0.19 0.03 0.00
24_Y 25_E 0.19 0.03 0.00
161_I 137_M 0.19 0.03 0.00
222_T 44_D 0.19 0.03 0.00
224_Y 216_W 0.18 0.03 0.00
133_L 164_C 0.18 0.03 0.00
126_R 84_D 0.18 0.03 0.00
19_I 15_F 0.18 0.03 0.00
8_N 12_A 0.18 0.03 0.00
13_W 21_V 0.18 0.03 0.00
54_S 58_L 0.18 0.03 0.00
7_D 10_L 0.18 0.03 0.00
121_Q 128_A 0.18 0.03 0.00
5_Q 5_G 0.18 0.03 0.00
20_H 16_S 0.18 0.03 0.00
190_H 185_M 0.18 0.03 0.00
206_T 207_D 0.18 0.03 0.00
225_D 228_V 0.18 0.03 0.00
7_D 7_G 0.18 0.03 0.00
20_H 18_D 0.18 0.03 0.00
80_D 130_R 0.18 0.03 0.00
10_V 10_L 0.18 0.03 0.00
103_L 112_L 0.18 0.03 0.00
14_S 22_F 0.18 0.03 0.00
22_I 25_E 0.18 0.03 0.00
226_D 229_P 0.18 0.03 0.00
21_Q 26_Y 0.18 0.03 0.00
16_Q 22_F 0.18 0.03 0.00
8_N 9_D 0.17 0.03 0.00
56_L 56_S 0.17 0.03 0.00
218_D 218_G 0.17 0.03 0.00
210_V 195_A 0.17 0.03 0.00
21_Q 19_G 0.17 0.03 0.00
25_A 133_G 0.17 0.03 0.00
44_A 139_G 0.17 0.03 0.00
121_Q 121_H 0.17 0.03 0.00
23_E 24_V 0.17 0.03 0.00
117_Q 125_L 0.17 0.03 0.00
18_R 24_V 0.17 0.03 0.00
20_H 20_R 0.17 0.03 0.00
124_G 125_L 0.17 0.03 0.00
147_T 120_V 0.17 0.03 0.00
15_P 22_F 0.17 0.03 0.00
10_V 14_T 0.17 0.03 0.00
18_R 22_F 0.17 0.03 0.00
17_G 15_F 0.17 0.03 0.00
129_G 84_D 0.17 0.03 0.00
17_G 23_Q 0.17 0.03 0.00
108_L 107_I 0.17 0.03 0.00
102_P 73_H 0.17 0.03 0.00
4_N 11_S 0.17 0.03 0.00
22_I 26_Y 0.17 0.03 0.00
24_Y 23_Q 0.17 0.03 0.00
43_H 42_C 0.17 0.03 0.00
21_Q 27_A 0.17 0.03 0.00
15_P 16_S 0.17 0.03 0.00
19_I 13_S 0.17 0.03 0.00
187_L 40_I 0.17 0.03 0.00
12_V 12_A 0.17 0.03 0.00
25_A 26_Y 0.17 0.03 0.00
13_W 19_G 0.17 0.03 0.00
40_S 45_G 0.17 0.03 0.00
4_N 18_D 0.17 0.03 0.00
118_I 126_Y 0.17 0.03 0.00
145_F 148_Q 0.17 0.03 0.00
14_S 17_P 0.16 0.03 0.00
220_E 222_N 0.16 0.03 0.00
122_R 122_A 0.16 0.03 0.00
129_G 27_A 0.16 0.03 0.00
24_Y 24_V 0.16 0.03 0.00
149_P 133_G 0.16 0.03 0.00
129_G 154_P 0.16 0.03 0.00
143_H 150_Y 0.16 0.03 0.00
24_Y 27_A 0.16 0.03 0.00
80_D 133_G 0.16 0.03 0.00
202_E 35_S 0.16 0.03 0.00
150_S 154_P 0.16 0.03 0.00
18_R 18_D 0.16 0.03 0.00
30_K 5_G 0.16 0.03 0.00
22_I 20_R 0.16 0.03 0.00
192_L 212_L 0.16 0.03 0.00
116_T 152_I 0.16 0.03 0.00
25_A 23_Q 0.16 0.03 0.00
178_E 162_W 0.16 0.03 0.00
74_I 83_A 0.16 0.03 0.00
149_P 155_S 0.16 0.03 0.00
11_T 21_V 0.16 0.03 0.00
5_Q 22_F 0.16 0.03 0.00
41_K 184_E 0.15 0.03 0.00
28_A 27_A 0.15 0.03 0.00
32_G 66_R 0.15 0.03 0.00
79_A 78_V 0.15 0.03 0.00
128_Y 154_P 0.15 0.03 0.00
69_H 106_N 0.15 0.03 0.00
17_G 27_A 0.15 0.03 0.00
222_T 216_W 0.15 0.03 0.00
213_G 75_G 0.15 0.03 0.00
16_Q 20_R 0.15 0.03 0.00
149_P 132_F 0.15 0.03 0.00
6_Y 9_D 0.15 0.03 0.00
38_L 190_I 0.15 0.03 0.00
33_S 51_E 0.15 0.03 0.00
185_N 235_E 0.15 0.03 0.00
135_A 46_V 0.15 0.03 0.00
81_A 77_A 0.15 0.03 0.00
137_Y 142_S 0.15 0.03 0.00
177_S 184_E 0.15 0.03 0.00
230_S 209_A 0.15 0.03 0.00
4_N 5_G 0.15 0.03 0.00
23_E 27_A 0.15 0.03 0.00
3_R 11_S 0.15 0.03 0.00
25_A 25_E 0.15 0.03 0.00
128_Y 123_Y 0.15 0.03 0.00
5_Q 11_S 0.15 0.03 0.00
20_H 9_D 0.15 0.03 0.00
5_Q 10_L 0.15 0.03 0.00
25_A 30_A 0.15 0.03 0.00
73_S 85_A 0.15 0.03 0.00
211_S 52_K 0.15 0.03 0.00
137_Y 219_E 0.15 0.03 0.00
20_H 7_G 0.15 0.03 0.00
25_A 19_G 0.15 0.03 0.00
224_Y 214_L 0.15 0.03 0.00
7_D 8_Y 0.15 0.03 0.00
30_K 33_N 0.14 0.03 0.00
9_D 7_G 0.14 0.03 0.00
7_D 22_F 0.14 0.03 0.00
218_D 188_R 0.14 0.03 0.00
217_K 218_G 0.14 0.03 0.00
164_R 201_V 0.14 0.03 0.00
225_D 230_K 0.14 0.03 0.00
119_P 132_F 0.14 0.03 0.00
71_G 215_S 0.14 0.03 0.00
208_K 199_Y 0.14 0.03 0.00
8_N 7_G 0.14 0.03 0.00
227_D 144_N 0.14 0.03 0.00
20_H 26_Y 0.14 0.03 0.00
196_R 210_F 0.14 0.03 0.00
17_G 16_S 0.14 0.03 0.00
50_K 213_E 0.14 0.03 0.00
Figure 5: The i (protein A) and j (protein B) are positions as given in the query sequences.

Scaled Score = raw_score/average(raw_scores)
Prob = P(contact | scaled_score, seq/len)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)
WARNING: The input alignment may be corrupted!
  • Sequence A is very similar to Sequence B (HHΔ = 0.167), these maybe paralogs! HHΔ is a measure (0 to 1) of how different two alignments are (the larger the value the more different they are).
ID Seq/Len Name Options I_Prob Status
6255 2.99 subFG00 Δgene:(0, 0) A:(1E-04, 4) B:(1E-04, 4) msa: HHblits (2015_06) 1.00 Done - Shared
6254 3.08 subFGnew Δgene:(0, 100) A:(1E-20, 4) B:(1E-20, 4) msa: HHblits (2015_06) 1.00 Done - Shared
6252 3.06 subFG Δgene:(0, ∞) A:(1E-04, 4) B:(1E-04, 4) msa: HHblits (2015_06) 1.00 Done - Shared
Page generated in 0.1696 seconds.