May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org
P_horikoshi_Dph2_bound_to_EF2_E_value_1E-10
Genes: A B A+B
Length: 342 732 1056
Sequences: 532 3141 7
Seq/Len: 1.56 4.29 0.01
Download Alignment
We filter this alignment to remove positions that have > 75% gaps before running GREMLIN.

[Show HHblits results] - Maybe useful in deciding what regions to trim.
Δgene Ratio of paralogs Joined
A B Seq/Len
1 0.00 0.00 0.00
2 0.00 0.00 0.00
5 0.00 0.00 0.00
10 0.00 0.00 0.00
20 0.01 0.01 0.01
100 0.01 0.02 0.04
∞ 0.02 0.13 0.18
Paired alignment generation
0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20
Sequence A E-value:
Iterations:
Sequence B E-value:
Iterations:
Δgene MSA
Figure 1: The effect of Δgene on ratio of paralogs in the genome for each gene, and the number of sequences in the resulting joined alignment. Figure 2: Distribution of Δgene across all genomes. Figure 3: Current parameters. You can use the form to adjust the parameters and resubmit the job!
GREMLIN results
  • ERROR: Not enough sequences to run GREMLIN analysis on (0.01 < 0.6).
ID Seq/Len Name Options I_Prob Status
0580 0.18 P_horikoshi_Dph2_bound_to_EF2_E_value2_1E-40_deltaGene_infinity Δgene:(1, ∞) A:(1E-40, 8) B:(1E-40, 8) msa: HHblits (2013_03) Killed - Shared
0577 0.01 P_horikoshi_Dph2_bound_to_EF2_E_value2_1E-4 Δgene:(1, 20) A:(1E-04, 8) B:(1E-04, 8) msa: HHblits (2013_03) Killed - Shared
0576 0.01 P_horikoshi_Dph2_bound_to_EF2_E_value_1E-40 Δgene:(1, 20) A:(1E-40, 8) B:(1E-20, 8) msa: HHblits (2013_03) Killed - Shared
0575 0.01 P_horikoshi_Dph2_bound_to_EF2_E_value_1E-10 Δgene:(1, 20) A:(1E-10, 8) B:(1E-20, 8) msa: HHblits (2013_03) Killed - Shared
0574 0.01 P_horikoshi_Dph2_bound_to_EF2 Δgene:(1, 20) A:(1E-20, 8) B:(1E-20, 8) msa: HHblits (2013_03) Killed - Shared
Page generated in 0.3186 seconds.