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OPENSEQ.org
Av1alpha-Av1beta_40
Genes: A B A+B
Length: 477 522 999
Sequences: 2573 2148 1
Seq/Len: 5.39 4.11 0
Download Alignment
We filter this alignment to remove positions that have > 75% gaps before running GREMLIN.

[Show Jackhmmer results] - Maybe useful in deciding what regions to trim.
Δgene Ratio of paralogs Joined
A B Seq/Len
1 0.61 0.59 0.00
2 0.63 0.61 0.00
5 0.64 0.62 0.00
10 0.66 0.62 0.00
20 0.66 0.63 0.00
100 0.76 0.74 0.00
∞ 0.77 0.76 0.00
Paired alignment generation
0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20
Sequence A E-value:
Iterations:
Sequence B E-value:
Iterations:
Δgene MSA
Figure 1: The effect of Δgene on ratio of paralogs in the genome for each gene, and the number of sequences in the resulting joined alignment. Figure 2: Distribution of Δgene across all genomes. Figure 3: Current parameters. You can use the form to adjust the parameters and resubmit the job!
GREMLIN results
  • ERROR: Not enough sequences to run GREMLIN analysis on (0 < 0.6).
 WARNING: The input alignment may be corrupted!
  • For sequence A, there is a high ratio (0.66 > 0.4) of paralogs.
  • For sequence B, there is a high ratio (0.63 > 0.4) of paralogs.
ID Seq/Len Name Options I_Prob Status
3726 0 Av1alpha-Av1beta_48 Δgene:(1, ∞) A:(1E-02, 8) B:(1E-02, 8) msa: Jackhmmer (2015_06) Killed - Shared
3725 0 Av1alpha-Av1beta_47 Δgene:(1, 100) A:(1E-02, 8) B:(1E-02, 8) msa: Jackhmmer (2015_06) Killed - Shared
3724 0 Av1alpha-Av1beta_46 Δgene:(1, 20) A:(1E-02, 8) B:(1E-02, 8) msa: Jackhmmer (2015_06) Killed - Shared
3723 2.29 Av1alpha-Av1beta_45 Δgene:(0, ∞) A:(1E-02, 8) B:(1E-02, 8) msa: Jackhmmer (2015_06) 1.00 Done - Shared
3722 2.29 Av1alpha-Av1beta_44 Δgene:(0, 100) A:(1E-02, 8) B:(1E-02, 8) msa: Jackhmmer (2015_06) 1.00 Done - Shared
3721 2.29 Av1alpha-Av1beta_43 Δgene:(0, 20) A:(1E-02, 8) B:(1E-02, 8) msa: Jackhmmer (2015_06) 1.00 Done - Shared
3720 0 Av1alpha-Av1beta_42 Δgene:(1, ∞) A:(1E-04, 8) B:(1E-04, 8) msa: Jackhmmer (2015_06) Killed - Shared
3719 0 Av1alpha-Av1beta_41 Δgene:(1, 100) A:(1E-04, 8) B:(1E-04, 8) msa: Jackhmmer (2015_06) Killed - Shared
3718 0 Av1alpha-Av1beta_40 Δgene:(1, 20) A:(1E-04, 8) B:(1E-04, 8) msa: Jackhmmer (2015_06) Killed - Shared
3717 2.3 Av1alpha-Av1beta_39 Δgene:(0, ∞) A:(1E-04, 8) B:(1E-04, 8) msa: Jackhmmer (2015_06) 1.00 Done - Shared
3716 2.3 Av1alpha-Av1beta_38 Δgene:(0, 100) A:(1E-04, 8) B:(1E-04, 8) msa: Jackhmmer (2015_06) 1.00 Done - Shared
3715 2.3 Av1alpha-Av1beta_37 Δgene:(0, 20) A:(1E-04, 8) B:(1E-04, 8) msa: Jackhmmer (2015_06) 1.00 Done - Shared
3714 0 Av1alpha-Av1beta_36 Δgene:(1, ∞) A:(1E-06, 8) B:(1E-06, 8) msa: Jackhmmer (2015_06) Killed - Shared
3713 0 Av1alpha-Av1beta_35 Δgene:(1, 100) A:(1E-06, 8) B:(1E-06, 8) msa: Jackhmmer (2015_06) Killed - Shared
3712 0 Av1alpha-Av1beta_34 Δgene:(1, 20) A:(1E-06, 8) B:(1E-06, 8) msa: Jackhmmer (2015_06) Killed - Shared
3711 2.25 Av1alpha-Av1beta_33 Δgene:(0, ∞) A:(1E-06, 8) B:(1E-06, 8) msa: Jackhmmer (2015_06) 1.00 Done - Shared
3710 2.25 Av1alpha-Av1beta_32 Δgene:(0, 100) A:(1E-06, 8) B:(1E-06, 8) msa: Jackhmmer (2015_06) 1.00 Done - Shared
3709 2.25 Av1alpha-Av1beta_31 Δgene:(0, 20) A:(1E-06, 8) B:(1E-06, 8) msa: Jackhmmer (2015_06) 1.00 Done - Shared
3708 0 Av1alpha-Av1beta_30 Δgene:(1, ∞) A:(1E-10, 8) B:(1E-10, 8) msa: Jackhmmer (2015_06) Killed - Shared
3707 0 Av1alpha-Av1beta_29 Δgene:(1, 100) A:(1E-10, 8) B:(1E-10, 8) msa: Jackhmmer (2015_06) Killed - Shared
3706 0 Av1alpha-Av1beta_28 Δgene:(1, 20) A:(1E-10, 8) B:(1E-10, 8) msa: Jackhmmer (2015_06) Killed - Shared
3705 2.31 Av1alpha-Av1beta_27 Δgene:(0, ∞) A:(1E-10, 8) B:(1E-10, 8) msa: Jackhmmer (2015_06) 1.00 Done - Shared
3704 2.31 Av1alpha-Av1beta_26 Δgene:(0, 100) A:(1E-10, 8) B:(1E-10, 8) msa: Jackhmmer (2015_06) 1.00 Done - Shared
3703 2.31 Av1alpha-Av1beta_25 Δgene:(0, 20) A:(1E-10, 8) B:(1E-10, 8) msa: Jackhmmer (2015_06) 1.00 Done - Shared
3702 0 Av1alpha-Av1beta_24 Δgene:(1, ∞) A:(1E-20, 8) B:(1E-20, 8) msa: Jackhmmer (2015_06) Killed - Shared
3701 0 Av1alpha-Av1beta_23 Δgene:(1, 100) A:(1E-20, 8) B:(1E-20, 8) msa: Jackhmmer (2015_06) Killed - Shared
3700 0 Av1alpha-Av1beta_22 Δgene:(1, 20) A:(1E-20, 8) B:(1E-20, 8) msa: Jackhmmer (2015_06) Killed - Shared
3699 2.28 Av1alpha-Av1beta_21 Δgene:(0, ∞) A:(1E-20, 8) B:(1E-20, 8) msa: Jackhmmer (2015_06) 1.00 Done - Shared
3698 2.28 Av1alpha-Av1beta Δgene:(0, 100) A:(1E-20, 8) B:(1E-20, 8) msa: Jackhmmer (2015_06) 1.00 Done - Shared
3696 0 Av1alpha-Av1beta_18 Δgene:(1, ∞) A:(1E-40, 8) B:(1E-40, 8) msa: Jackhmmer (2015_06) Killed
3695 0 Av1alpha-Av1beta_17 Δgene:(1, 100) A:(1E-40, 8) B:(1E-40, 8) msa: Jackhmmer (2015_06) Killed
3693 0 Av1alpha-Av1beta_16 Δgene:(1, 20) A:(1E-40, 8) B:(1E-40, 8) msa: Jackhmmer (2015_06) Killed
3692 1.98 Av1alpha-Av1beta_14 Δgene:(0, ∞) A:(1E-40, 8) B:(1E-40, 8) msa: Jackhmmer (2015_06) 1.00 Done
3691 1.98 Av1alpha-Av1beta_14 Δgene:(0, 100) A:(1E-40, 8) B:(1E-40, 8) msa: Jackhmmer (2015_06) 1.00 Done
3690 1.98 Av1alpha-Av1beta_13 Δgene:(0, 20) A:(1E-40, 8) B:(1E-40, 8) msa: Jackhmmer (2015_06) 1.00 Done
3654 0 Av1alpha-Av1beta_12 Δgene:(1, ∞) A:(1E-60, 8) B:(1E-60, 8) msa: Jackhmmer (2015_06) Killed
3653 0 Av1alpha-Av1beta_11 Δgene:(1, 100) A:(1E-60, 8) B:(1E-60, 8) msa: Jackhmmer (2015_06) Killed
3652 0 Av1alpha-Av1beta_10 Δgene:(1, 20) A:(1E-60, 8) B:(1E-60, 8) msa: Jackhmmer (2015_06) Killed
3651 1.6 Av1alpha-Av1beta_9 Δgene:(0, ∞) A:(1E-60, 8) B:(1E-60, 8) msa: Jackhmmer (2015_06) 1.00 Done
3650 1.6 Av1alpha-Av1beta_8 Δgene:(0, 100) A:(1E-60, 8) B:(1E-60, 8) msa: Jackhmmer (2015_06) 1.00 Done
3649 1.6 Av1alpha-Av1beta_7 Δgene:(0, 20) A:(1E-60, 8) B:(1E-60, 8) msa: Jackhmmer (2015_06) 1.00 Done
3648 0.3 Av1alpha-Av1beta_6 Δgene:(1, ∞) A:(1E-80, 8) B:(1E-80, 8) msa: Jackhmmer (2015_06) 0.00 Done
3647 0.3 Av1alpha-Av1beta_5 Δgene:(1, 100) A:(1E-80, 8) B:(1E-80, 8) msa: Jackhmmer (2015_06) 0.00 Done
3646 0.3 Av1alpha-Av1beta_4 Δgene:(1, 20) A:(1E-80, 8) B:(1E-80, 8) msa: Jackhmmer (2015_06) 0.00 Done
3645 0.65 Av1alpha-Av1beta_3 Δgene:(0, ∞) A:(1E-80, 8) B:(1E-80, 8) msa: Jackhmmer (2015_06) 1.00 Done
3644 0.65 Av1alpha-Av1beta_2 Δgene:(0, 100) A:(1E-80, 8) B:(1E-80, 8) msa: Jackhmmer (2015_06) 1.00 Done
3643 0.65 Av1alpha-Av1beta_1 Δgene:(0, 20) A:(1E-80, 8) B:(1E-80, 8) msa: Jackhmmer (2015_06) 1.00 Done - Shared
3642 2.28 Av1alpha-Av1beta Δgene:(0, 20) A:(1E-20, 8) B:(1E-20, 8) msa: Jackhmmer (2015_06) 1.00 Done - Shared
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