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OPENSEQ.org

myo_C1

Genes: A B A+B
Length: 100 900 950
Sequences: 13675 1722 40
Seq/Len: 136.75 1.91 0.04
MirrorTree (Pazo et al. 2001) 0.15
Download Alignment
We filter this alignment to remove positions that have > 75% gaps before running GREMLIN.

[Show Jackhmmer results] - Maybe useful in deciding what regions to trim.

Δgene Ratio of paralogs Joined
A B Seq/Len
1 0.16 0.05 0.00
2 0.18 0.05 0.00
5 0.20 0.05 0.01
10 0.20 0.06 0.02
20 0.21 0.06 0.04
100 0.23 0.08 0.13
0.25 0.12 0.18
Paired alignment generation
0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20
Sequence A E-value:
Iterations:
Sequence B E-value:
Iterations:
Δgene MSA
Figure 1: The effect of Δgene on ratio of paralogs in the genome for each gene, and the number of sequences in the resulting joined alignment. Figure 2: Distribution of Δgene across all genomes. Figure 3: Current parameters. You can use the form to adjust the parameters and resubmit the job!

GREMLIN results
  • ERROR: Not enough sequences to run GREMLIN analysis on (0.04 < 0.6).

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