May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org
L17 - L34
UniProt: Q9Z9H5 - P80340
Length: 167
Sequences: 879
Seq/Len: 5.39
I_Prob: 0.01
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2dR7 3v2fR7Contact Map
2j002j01R7 2j03R7Contact Map
4juw4juxR7Contact Map
4kix4kixN2 4kizN2 4kj1N2 4kj3N2Contact Map
4kj54kj5N2 4kj7N2 4kj9N2 4kjbN2Contact Map
2zjr2zjrK2Contact Map
4btc4btdR7Contact Map
3uyd3uye07 3uyg07Contact Map
3v223v23R7 3v25R7Contact Map
4gd13r8sN2 3r8tN2Contact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
114_V 26_G 0.93 0.01
24_Q 36_Q 0.92 0.01
72_D 24_T 0.85 0.01
45_R 8_N 0.73 0.01
33_R 10_R 0.73 0.01
52_I 24_T 0.71 0.01
25_A 32_K 0.71 0.01
87_Y 20_A 0.68 0.00
91_Q 33_R 0.67 0.00
56_K 11_K 0.63 0.00
108_G 9_R 0.62 0.00
29_L 36_Q 0.62 0.00
55_A 38_G 0.61 0.00
48_V 44_P 0.61 0.00
30_T 43_T 0.61 0.00
115_E 43_T 0.60 0.00
98_L 36_Q 0.59 0.00
6_S 36_Q 0.59 0.00
31_H 38_G 0.59 0.00
34_I 42_L 0.58 0.00
55_A 43_T 0.58 0.00
68_R 1_M 0.58 0.00
15_S 43_T 0.57 0.00
72_D 11_K 0.57 0.00
8_R 43_T 0.56 0.00
4_L 9_R 0.56 0.00
40_K 2_K 0.56 0.00
105_R 5_W 0.55 0.00
78_K 1_M 0.55 0.00
101_A 5_W 0.55 0.00
74_K 33_R 0.55 0.00
73_V 36_Q 0.55 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
Page generated in 0.1391 seconds.